Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 FOXN3-AS2-201ENST00000554071 1262 ntBASIC15.31■□□□□ 0.04
VCANP13611 AC138696.2-201ENST00000607376 223 ntBASIC15.31■□□□□ 0.04
VCANP13611 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VCANP13611 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VCANP13611 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VCANP13611 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VCANP13611 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VCANP13611 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VCANP13611 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VCANP13611 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
VCANP13611 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VCANP13611 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VCANP13611 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC15.31■□□□□ 0.04
VCANP13611 TMEM60-201ENST00000257663 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VCANP13611 EEF1DP5-201ENST00000431410 772 ntBASIC15.31■□□□□ 0.04
VCANP13611 AC026412.1-206ENST00000502273 206 ntBASIC15.31■□□□□ 0.04
VCANP13611 ABCC6P2-201ENST00000526069 590 ntBASIC15.31■□□□□ 0.04
VCANP13611 AC011489.1-201ENST00000586744 690 ntTSL 3 BASIC15.31■□□□□ 0.04
VCANP13611 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC15.31■□□□□ 0.04
VCANP13611 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC15.31■□□□□ 0.04
VCANP13611 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VCANP13611 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VCANP13611 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VCANP13611 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC15.31■□□□□ 0.04
VCANP13611 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
VCANP13611 FTX-216ENST00000638985 1367 ntTSL 5 BASIC15.3■□□□□ 0.04
VCANP13611 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VCANP13611 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VCANP13611 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VCANP13611 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC15.3■□□□□ 0.04
VCANP13611 AC090136.2-201ENST00000517809 420 ntBASIC15.3■□□□□ 0.04
VCANP13611 F11R-204ENST00000537746 1245 ntTSL 2 BASIC15.3■□□□□ 0.04
VCANP13611 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC15.3■□□□□ 0.04
VCANP13611 HELLS-212ENST00000630929 400 ntTSL 5 BASIC15.3■□□□□ 0.04
VCANP13611 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC15.3■□□□□ 0.04
VCANP13611 AC006207.1-201ENST00000637958 562 ntTSL 5 BASIC15.3■□□□□ 0.04
VCANP13611 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC15.3■□□□□ 0.04
VCANP13611 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VCANP13611 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC15.3■□□□□ 0.04
VCANP13611 ZBTB45P1-201ENST00000452761 1456 ntBASIC15.3■□□□□ 0.04
VCANP13611 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC15.3■□□□□ 0.04
VCANP13611 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VCANP13611 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VCANP13611 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VCANP13611 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC15.3■□□□□ 0.04
VCANP13611 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VCANP13611 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC15.3■□□□□ 0.04
VCANP13611 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC15.3■□□□□ 0.04
VCANP13611 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC15.3■□□□□ 0.04
VCANP13611 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC15.3■□□□□ 0.04
VCANP13611 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
VCANP13611 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VCANP13611 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VCANP13611 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
VCANP13611 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
VCANP13611 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VCANP13611 AC068831.5-201ENST00000557387 328 ntBASIC15.3■□□□□ 0.04
VCANP13611 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VCANP13611 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VCANP13611 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VCANP13611 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VCANP13611 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC15.29■□□□□ 0.04
VCANP13611 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VCANP13611 NKILA-202ENST00000614771 2598 ntBASIC15.29■□□□□ 0.04
VCANP13611 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VCANP13611 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
VCANP13611 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VCANP13611 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC15.29■□□□□ 0.04
VCANP13611 DBNDD2-207ENST00000372722 1202 ntTSL 3 BASIC15.29■□□□□ 0.04
VCANP13611 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VCANP13611 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC15.29■□□□□ 0.04
VCANP13611 FAM157A-201ENST00000437428 1141 ntTSL 3 BASIC15.29■□□□□ 0.04
VCANP13611 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC15.29■□□□□ 0.04
VCANP13611 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC15.29■□□□□ 0.04
VCANP13611 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VCANP13611 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC15.29■□□□□ 0.04
VCANP13611 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VCANP13611 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VCANP13611 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC15.29■□□□□ 0.04
VCANP13611 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VCANP13611 OR10N1P-201ENST00000392758 869 ntBASIC15.29■□□□□ 0.04
VCANP13611 AC108734.2-201ENST00000420887 1069 ntBASIC15.29■□□□□ 0.04
VCANP13611 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC15.29■□□□□ 0.04
VCANP13611 VENTXP4-201ENST00000449029 958 ntBASIC15.29■□□□□ 0.04
VCANP13611 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC15.29■□□□□ 0.04
VCANP13611 DUX4L47-201ENST00000566374 394 ntBASIC15.29■□□□□ 0.04
VCANP13611 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
VCANP13611 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC15.29■□□□□ 0.04
VCANP13611 AL160191.2-201ENST00000603975 601 ntBASIC15.29■□□□□ 0.04
VCANP13611 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VCANP13611 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
VCANP13611 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VCANP13611 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VCANP13611 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VCANP13611 XAGE2-201ENST00000286049 618 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VCANP13611 GNG4-201ENST00000366597 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VCANP13611 SNORA57-201ENST00000383870 149 ntBASIC15.28■□□□□ 0.04
VCANP13611 AC027612.2-202ENST00000445955 1199 ntBASIC15.28■□□□□ 0.04
VCANP13611 AC008440.1-201ENST00000455835 439 ntTSL 5 BASIC15.28■□□□□ 0.04
VCANP13611 SUCLA2-205ENST00000470760 1445 ntTSL 2 BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms