Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 PPT1-213ENST00000641319 2388 ntBASIC11.19□□□□□ -0.62
SMKR1H3BMG3 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 GHSR-202ENST00000427970 912 ntBASIC11.19□□□□□ -0.62
SMKR1H3BMG3 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 C8orf49-201ENST00000525043 1968 ntBASIC11.19□□□□□ -0.62
SMKR1H3BMG3 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 FOXO1B-201ENST00000504678 1527 ntBASIC11.19□□□□□ -0.62
SMKR1H3BMG3 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
SMKR1H3BMG3 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 AC027612.1-201ENST00000445234 2395 ntBASIC11.18□□□□□ -0.62
SMKR1H3BMG3 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 AC092910.1-201ENST00000482027 1129 ntBASIC11.18□□□□□ -0.62
SMKR1H3BMG3 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 CD63-210ENST00000550776 870 ntTSL 5 BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 LINC01711-201ENST00000598340 967 ntBASIC11.18□□□□□ -0.62
SMKR1H3BMG3 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 TCAF1P1-201ENST00000414990 2232 ntBASIC11.18□□□□□ -0.62
SMKR1H3BMG3 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 AC130686.1-201ENST00000622936 2466 ntBASIC11.18□□□□□ -0.62
SMKR1H3BMG3 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC11.18□□□□□ -0.62
SMKR1H3BMG3 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms