Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC14.87□□□□□ -0.03
CCDC3Q9BQI4 KLK3-211ENST00000597483 810 ntTSL 2 BASIC14.87□□□□□ -0.03
CCDC3Q9BQI4 ECM1P1-201ENST00000604092 1279 ntBASIC14.87□□□□□ -0.03
CCDC3Q9BQI4 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC14.87□□□□□ -0.03
CCDC3Q9BQI4 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC14.87□□□□□ -0.03
CCDC3Q9BQI4 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC14.87□□□□□ -0.03
CCDC3Q9BQI4 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC14.87□□□□□ -0.03
CCDC3Q9BQI4 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC3Q9BQI4 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC3Q9BQI4 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC3Q9BQI4 AMT-224ENST00000635808 1610 ntTSL 5 BASIC14.87□□□□□ -0.03
CCDC3Q9BQI4 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC3Q9BQI4 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC3Q9BQI4 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC3Q9BQI4 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC14.87□□□□□ -0.03
CCDC3Q9BQI4 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC3Q9BQI4 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC3Q9BQI4 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC3Q9BQI4 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
CCDC3Q9BQI4 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC3Q9BQI4 AL354989.2-201ENST00000435838 1540 ntBASIC14.87□□□□□ -0.03
CCDC3Q9BQI4 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 AC148477.4-201ENST00000613430 1793 ntBASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 RPS3-201ENST00000278572 907 ntTSL 3 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 TPM3P8-201ENST00000330554 643 ntBASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 AGER-203ENST00000375065 665 ntTSL 2 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 CD8B2-202ENST00000417670 633 ntBASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 MTX1P1-201ENST00000440904 838 ntBASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 HOMER2P2-201ENST00000451621 847 ntBASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 TPI1-206ENST00000488464 791 ntTSL 5 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 ACR-203ENST00000529621 708 ntTSL 5 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 LRRC59-203ENST00000576448 1531 ntBASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC3Q9BQI4 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC3Q9BQI4 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC3Q9BQI4 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC3Q9BQI4 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC3Q9BQI4 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC3Q9BQI4 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC14.85□□□□□ -0.03
CCDC3Q9BQI4 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
CCDC3Q9BQI4 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC3Q9BQI4 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC3Q9BQI4 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC3Q9BQI4 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC3Q9BQI4 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC3Q9BQI4 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC14.85□□□□□ -0.03
CCDC3Q9BQI4 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
CCDC3Q9BQI4 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms