Protein–RNA interactions for Protein: Q96LD4

TRIM47, Tripartite motif-containing protein 47, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47Q96LD4 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
TRIM47Q96LD4 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM47Q96LD4 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC17.82■□□□□ 0.44
TRIM47Q96LD4 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC17.82■□□□□ 0.44
TRIM47Q96LD4 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM47Q96LD4 AC092850.2-201ENST00000623821 2697 ntBASIC17.82■□□□□ 0.44
TRIM47Q96LD4 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC17.82■□□□□ 0.44
TRIM47Q96LD4 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC17.82■□□□□ 0.44
TRIM47Q96LD4 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM47Q96LD4 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRIM47Q96LD4 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
TRIM47Q96LD4 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 CICP13-201ENST00000422015 2789 ntBASIC17.81■□□□□ 0.44
TRIM47Q96LD4 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 CYP46A4P-201ENST00000414953 267 ntBASIC17.81■□□□□ 0.44
TRIM47Q96LD4 HSPB1P2-201ENST00000448722 546 ntBASIC17.81■□□□□ 0.44
TRIM47Q96LD4 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 CMC2-214ENST00000565925 640 ntTSL 5 BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 ECM1P1-201ENST00000604092 1279 ntBASIC17.81■□□□□ 0.44
TRIM47Q96LD4 AC091812.3-201ENST00000621362 345 ntBASIC17.81■□□□□ 0.44
TRIM47Q96LD4 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRIM47Q96LD4 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 AMT-233ENST00000636522 1620 ntTSL 2 BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 MIR33B-201ENST00000385104 96 ntBASIC17.8■□□□□ 0.44
TRIM47Q96LD4 AC104457.1-201ENST00000401024 814 ntBASIC17.8■□□□□ 0.44
TRIM47Q96LD4 SUN1-204ENST00000403868 978 ntTSL 2 BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 AC016700.1-201ENST00000429424 312 ntBASIC17.8■□□□□ 0.44
TRIM47Q96LD4 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 PTPA-217ENST00000434095 870 ntTSL 2 BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 CNN2P10-201ENST00000443067 918 ntBASIC17.8■□□□□ 0.44
TRIM47Q96LD4 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TRIM47Q96LD4 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms