Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC23.41■■□□□ 1.34
VPS8Q8N3P4 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC23.41■■□□□ 1.34
VPS8Q8N3P4 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC23.41■■□□□ 1.34
VPS8Q8N3P4 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC23.41■■□□□ 1.34
VPS8Q8N3P4 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
VPS8Q8N3P4 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC23.41■■□□□ 1.34
VPS8Q8N3P4 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC23.41■■□□□ 1.34
VPS8Q8N3P4 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC23.41■■□□□ 1.34
VPS8Q8N3P4 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC23.41■■□□□ 1.34
VPS8Q8N3P4 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC23.41■■□□□ 1.34
VPS8Q8N3P4 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC23.41■■□□□ 1.34
VPS8Q8N3P4 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC23.41■■□□□ 1.34
VPS8Q8N3P4 ATP6V0CP2-201ENST00000469409 207 ntBASIC23.41■■□□□ 1.34
VPS8Q8N3P4 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC23.41■■□□□ 1.34
VPS8Q8N3P4 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
VPS8Q8N3P4 MX1-218ENST00000619682 1980 ntTSL 5 BASIC23.41■■□□□ 1.34
VPS8Q8N3P4 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC23.4■■□□□ 1.34
VPS8Q8N3P4 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC23.4■■□□□ 1.34
VPS8Q8N3P4 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
VPS8Q8N3P4 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC23.4■■□□□ 1.34
VPS8Q8N3P4 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
VPS8Q8N3P4 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
VPS8Q8N3P4 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC23.4■■□□□ 1.34
VPS8Q8N3P4 AC244394.1-201ENST00000435000 1665 ntBASIC23.4■■□□□ 1.34
VPS8Q8N3P4 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
VPS8Q8N3P4 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
VPS8Q8N3P4 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC23.4■■□□□ 1.34
VPS8Q8N3P4 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC23.4■■□□□ 1.34
VPS8Q8N3P4 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
VPS8Q8N3P4 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC23.4■■□□□ 1.34
VPS8Q8N3P4 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
VPS8Q8N3P4 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
VPS8Q8N3P4 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
VPS8Q8N3P4 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC23.4■■□□□ 1.34
VPS8Q8N3P4 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC23.4■■□□□ 1.34
VPS8Q8N3P4 KLF2P1-201ENST00000447438 1042 ntBASIC23.4■■□□□ 1.34
VPS8Q8N3P4 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC23.4■■□□□ 1.34
VPS8Q8N3P4 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC23.4■■□□□ 1.34
VPS8Q8N3P4 DUX4L46-201ENST00000566845 751 ntBASIC23.4■■□□□ 1.34
VPS8Q8N3P4 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC23.4■■□□□ 1.34
VPS8Q8N3P4 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
VPS8Q8N3P4 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
VPS8Q8N3P4 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
VPS8Q8N3P4 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
VPS8Q8N3P4 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC23.39■■□□□ 1.34
VPS8Q8N3P4 LINC00554-201ENST00000564841 3011 ntBASIC23.39■■□□□ 1.34
VPS8Q8N3P4 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
VPS8Q8N3P4 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
VPS8Q8N3P4 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC23.39■■□□□ 1.34
VPS8Q8N3P4 LTF-203ENST00000426532 2494 ntTSL 2 BASIC23.39■■□□□ 1.34
VPS8Q8N3P4 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC23.39■■□□□ 1.34
VPS8Q8N3P4 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC23.39■■□□□ 1.34
VPS8Q8N3P4 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.33
VPS8Q8N3P4 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC23.39■■□□□ 1.33
VPS8Q8N3P4 HNRNPA1P32-201ENST00000396326 963 ntBASIC23.39■■□□□ 1.33
VPS8Q8N3P4 GPAA1P2-201ENST00000417923 928 ntBASIC23.39■■□□□ 1.33
VPS8Q8N3P4 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC23.39■■□□□ 1.33
VPS8Q8N3P4 OARD1-212ENST00000482515 832 ntTSL 2 BASIC23.39■■□□□ 1.33
VPS8Q8N3P4 FAM8A2P-201ENST00000528813 1142 ntBASIC23.39■■□□□ 1.33
VPS8Q8N3P4 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC23.39■■□□□ 1.33
VPS8Q8N3P4 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC23.39■■□□□ 1.33
VPS8Q8N3P4 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC23.39■■□□□ 1.33
VPS8Q8N3P4 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
VPS8Q8N3P4 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC23.39■■□□□ 1.33
VPS8Q8N3P4 AC244093.1-201ENST00000610837 814 ntBASIC23.39■■□□□ 1.33
VPS8Q8N3P4 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC23.39■■□□□ 1.33
VPS8Q8N3P4 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC23.39■■□□□ 1.33
VPS8Q8N3P4 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC23.39■■□□□ 1.33
VPS8Q8N3P4 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC23.39■■□□□ 1.33
VPS8Q8N3P4 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
VPS8Q8N3P4 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
VPS8Q8N3P4 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
VPS8Q8N3P4 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC23.38■■□□□ 1.33
VPS8Q8N3P4 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
VPS8Q8N3P4 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC23.38■■□□□ 1.33
VPS8Q8N3P4 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC23.38■■□□□ 1.33
VPS8Q8N3P4 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC23.38■■□□□ 1.33
VPS8Q8N3P4 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
VPS8Q8N3P4 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
VPS8Q8N3P4 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC23.38■■□□□ 1.33
VPS8Q8N3P4 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
VPS8Q8N3P4 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
VPS8Q8N3P4 PTPA-215ENST00000432124 567 ntTSL 4 BASIC23.38■■□□□ 1.33
VPS8Q8N3P4 SERPINA13P-202ENST00000478994 924 ntBASIC23.38■■□□□ 1.33
VPS8Q8N3P4 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
VPS8Q8N3P4 HNRNPA1P36-201ENST00000521313 955 ntBASIC23.38■■□□□ 1.33
VPS8Q8N3P4 AC005324.6-201ENST00000587972 613 ntBASIC23.38■■□□□ 1.33
VPS8Q8N3P4 MIR6787-201ENST00000616675 61 ntBASIC23.38■■□□□ 1.33
VPS8Q8N3P4 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC23.38■■□□□ 1.33
VPS8Q8N3P4 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
VPS8Q8N3P4 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC23.38■■□□□ 1.33
VPS8Q8N3P4 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC23.38■■□□□ 1.33
VPS8Q8N3P4 FGD5P1-202ENST00000614866 2498 ntBASIC23.38■■□□□ 1.33
VPS8Q8N3P4 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
VPS8Q8N3P4 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
VPS8Q8N3P4 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
VPS8Q8N3P4 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC23.38■■□□□ 1.33
VPS8Q8N3P4 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
VPS8Q8N3P4 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
VPS8Q8N3P4 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms