Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RNF4P78317 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
RNF4P78317 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC14.11□□□□□ -0.15
RNF4P78317 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
RNF4P78317 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.11□□□□□ -0.15
RNF4P78317 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RNF4P78317 WASH3P-207ENST00000560956 1394 ntBASIC14.11□□□□□ -0.15
RNF4P78317 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RNF4P78317 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RNF4P78317 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RNF4P78317 PDIA3P1-201ENST00000471856 1510 ntBASIC14.11□□□□□ -0.15
RNF4P78317 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC14.11□□□□□ -0.15
RNF4P78317 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC14.11□□□□□ -0.15
RNF4P78317 PES1-204ENST00000402284 2144 ntTSL 5 BASIC14.11□□□□□ -0.15
RNF4P78317 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RNF4P78317 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RNF4P78317 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RNF4P78317 ZBTB12BP-201ENST00000314232 1122 ntBASIC14.11□□□□□ -0.15
RNF4P78317 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
RNF4P78317 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC14.11□□□□□ -0.15
RNF4P78317 MIR1909-201ENST00000411312 80 ntBASIC14.11□□□□□ -0.15
RNF4P78317 FES-204ENST00000414248 2327 ntTSL 2 BASIC14.11□□□□□ -0.15
RNF4P78317 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RNF4P78317 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC14.11□□□□□ -0.15
RNF4P78317 ATP5G2P4-201ENST00000442175 420 ntBASIC14.11□□□□□ -0.15
RNF4P78317 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC14.11□□□□□ -0.15
RNF4P78317 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
RNF4P78317 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC14.11□□□□□ -0.15
RNF4P78317 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC14.11□□□□□ -0.15
RNF4P78317 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC14.11□□□□□ -0.15
RNF4P78317 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC14.11□□□□□ -0.15
RNF4P78317 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
RNF4P78317 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC14.11□□□□□ -0.15
RNF4P78317 NOP2-220ENST00000545915 630 ntTSL 2 BASIC14.11□□□□□ -0.15
RNF4P78317 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
RNF4P78317 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC14.11□□□□□ -0.15
RNF4P78317 AC025279.2-201ENST00000569730 653 ntBASIC14.11□□□□□ -0.15
RNF4P78317 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC14.11□□□□□ -0.15
RNF4P78317 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC14.11□□□□□ -0.15
RNF4P78317 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RNF4P78317 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RNF4P78317 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC14.11□□□□□ -0.15
RNF4P78317 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC14.11□□□□□ -0.15
RNF4P78317 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RNF4P78317 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
RNF4P78317 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
RNF4P78317 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RNF4P78317 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RNF4P78317 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC14.11□□□□□ -0.15
RNF4P78317 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RNF4P78317 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RNF4P78317 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RNF4P78317 AC092384.3-202ENST00000564646 2873 ntBASIC14.11□□□□□ -0.15
RNF4P78317 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
RNF4P78317 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RNF4P78317 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC14.11□□□□□ -0.15
RNF4P78317 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RNF4P78317 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC14.11□□□□□ -0.15
RNF4P78317 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.11□□□□□ -0.15
RNF4P78317 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC14.11□□□□□ -0.15
RNF4P78317 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
RNF4P78317 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC14.11□□□□□ -0.15
RNF4P78317 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC14.11□□□□□ -0.15
RNF4P78317 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RNF4P78317 AL138709.1-201ENST00000614840 1693 ntBASIC14.1□□□□□ -0.15
RNF4P78317 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
RNF4P78317 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
RNF4P78317 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC14.1□□□□□ -0.15
RNF4P78317 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
RNF4P78317 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.1□□□□□ -0.15
RNF4P78317 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC14.1□□□□□ -0.15
RNF4P78317 FOS-202ENST00000535987 1402 ntTSL 2 BASIC14.1□□□□□ -0.15
RNF4P78317 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
RNF4P78317 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
RNF4P78317 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC14.1□□□□□ -0.15
RNF4P78317 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
RNF4P78317 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNF4P78317 IFT20-216ENST00000588477 774 ntTSL 5 BASIC14.1□□□□□ -0.15
RNF4P78317 AC244669.2-201ENST00000612320 853 ntBASIC14.1□□□□□ -0.15
RNF4P78317 AC132938.4-201ENST00000623835 848 ntBASIC14.1□□□□□ -0.15
RNF4P78317 AL603764.1-201ENST00000636452 321 ntBASIC14.1□□□□□ -0.15
RNF4P78317 LINC02228-204ENST00000642115 2962 ntBASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms