Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
SCN4AP35499 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC17.45■□□□□ 0.38
SCN4AP35499 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
SCN4AP35499 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SCN4AP35499 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
SCN4AP35499 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SCN4AP35499 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SCN4AP35499 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SCN4AP35499 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
SCN4AP35499 PTGER4P2-201ENST00000328411 252 ntBASIC17.44■□□□□ 0.38
SCN4AP35499 JTB-202ENST00000356648 1040 ntTSL 2 BASIC17.44■□□□□ 0.38
SCN4AP35499 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC17.44■□□□□ 0.38
SCN4AP35499 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC17.44■□□□□ 0.38
SCN4AP35499 AC018638.5-201ENST00000450885 754 ntBASIC17.44■□□□□ 0.38
SCN4AP35499 PTGER4P3-201ENST00000458150 252 ntBASIC17.44■□□□□ 0.38
SCN4AP35499 RPL18AP8-201ENST00000486071 528 ntBASIC17.44■□□□□ 0.38
SCN4AP35499 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC17.44■□□□□ 0.38
SCN4AP35499 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC17.44■□□□□ 0.38
SCN4AP35499 CYP4F36P-201ENST00000589193 186 ntBASIC17.44■□□□□ 0.38
SCN4AP35499 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SCN4AP35499 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SCN4AP35499 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC17.44■□□□□ 0.38
SCN4AP35499 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SCN4AP35499 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SCN4AP35499 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
SCN4AP35499 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SCN4AP35499 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SCN4AP35499 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
SCN4AP35499 SERBP1P2-201ENST00000436888 1164 ntBASIC17.44■□□□□ 0.38
SCN4AP35499 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SCN4AP35499 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC17.44■□□□□ 0.38
SCN4AP35499 AC093826.1-201ENST00000508655 993 ntBASIC17.44■□□□□ 0.38
SCN4AP35499 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SCN4AP35499 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC17.44■□□□□ 0.38
SCN4AP35499 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SCN4AP35499 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC17.44■□□□□ 0.38
SCN4AP35499 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC17.44■□□□□ 0.38
SCN4AP35499 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
SCN4AP35499 AL359258.3-201ENST00000622910 2331 ntBASIC17.44■□□□□ 0.38
SCN4AP35499 AC011676.5-201ENST00000624864 2660 ntBASIC17.44■□□□□ 0.38
SCN4AP35499 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SCN4AP35499 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SCN4AP35499 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SCN4AP35499 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC17.43■□□□□ 0.38
SCN4AP35499 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
SCN4AP35499 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SCN4AP35499 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SCN4AP35499 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SCN4AP35499 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.43■□□□□ 0.38
SCN4AP35499 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SCN4AP35499 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.43■□□□□ 0.38
SCN4AP35499 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
SCN4AP35499 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC17.43■□□□□ 0.38
SCN4AP35499 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SCN4AP35499 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
SCN4AP35499 AF274858.1-201ENST00000406288 372 ntBASIC17.43■□□□□ 0.38
SCN4AP35499 ACTG1P19-201ENST00000418987 1116 ntBASIC17.43■□□□□ 0.38
SCN4AP35499 OR51A9P-201ENST00000422578 911 ntBASIC17.43■□□□□ 0.38
SCN4AP35499 NME6-208ENST00000435684 599 ntTSL 2 BASIC17.43■□□□□ 0.38
SCN4AP35499 RN7SL277P-201ENST00000481521 288 ntBASIC17.43■□□□□ 0.38
SCN4AP35499 RN7SL582P-201ENST00000491078 279 ntBASIC17.43■□□□□ 0.38
SCN4AP35499 AC122719.1-201ENST00000507989 559 ntTSL 4 BASIC17.43■□□□□ 0.38
SCN4AP35499 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC17.43■□□□□ 0.38
SCN4AP35499 AC068831.5-201ENST00000557387 328 ntBASIC17.43■□□□□ 0.38
SCN4AP35499 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SCN4AP35499 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SCN4AP35499 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
SCN4AP35499 AGGF1P2-201ENST00000426656 2106 ntBASIC17.43■□□□□ 0.38
SCN4AP35499 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC17.43■□□□□ 0.38
SCN4AP35499 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SCN4AP35499 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC17.42■□□□□ 0.38
SCN4AP35499 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC17.42■□□□□ 0.38
SCN4AP35499 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SCN4AP35499 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SCN4AP35499 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC17.42■□□□□ 0.38
SCN4AP35499 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC17.42■□□□□ 0.38
SCN4AP35499 HLA-DPA2-205ENST00000433582 733 ntBASIC17.42■□□□□ 0.38
SCN4AP35499 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC17.42■□□□□ 0.38
SCN4AP35499 AC063952.3-201ENST00000467756 308 ntBASIC17.42■□□□□ 0.38
SCN4AP35499 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
SCN4AP35499 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC17.42■□□□□ 0.38
SCN4AP35499 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC17.42■□□□□ 0.38
SCN4AP35499 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SCN4AP35499 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SCN4AP35499 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
SCN4AP35499 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SCN4AP35499 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
SCN4AP35499 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
SCN4AP35499 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SCN4AP35499 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SCN4AP35499 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SCN4AP35499 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC17.42■□□□□ 0.38
SCN4AP35499 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SCN4AP35499 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SCN4AP35499 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
SCN4AP35499 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.42■□□□□ 0.38
SCN4AP35499 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
SCN4AP35499 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
SCN4AP35499 GNG10P1-201ENST00000452289 199 ntBASIC17.42■□□□□ 0.38
SCN4AP35499 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms