Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.02■□□□□ 0.16
BDNFP23560 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
BDNFP23560 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
BDNFP23560 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
BDNFP23560 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
BDNFP23560 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
BDNFP23560 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
BDNFP23560 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.16
BDNFP23560 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
BDNFP23560 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC16.02■□□□□ 0.16
BDNFP23560 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
BDNFP23560 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC16.02■□□□□ 0.16
BDNFP23560 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
BDNFP23560 MROH4P-201ENST00000431302 1578 ntBASIC16.02■□□□□ 0.16
BDNFP23560 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
BDNFP23560 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
BDNFP23560 CD8B2-202ENST00000417670 633 ntBASIC16.02■□□□□ 0.16
BDNFP23560 POM121L8P-201ENST00000417732 1281 ntBASIC16.02■□□□□ 0.16
BDNFP23560 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC16.02■□□□□ 0.16
BDNFP23560 POM121L9P-203ENST00000441984 1285 ntBASIC16.02■□□□□ 0.16
BDNFP23560 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
BDNFP23560 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC16.02■□□□□ 0.16
BDNFP23560 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
BDNFP23560 AC026434.2-201ENST00000506094 1078 ntBASIC16.02■□□□□ 0.16
BDNFP23560 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC16.02■□□□□ 0.16
BDNFP23560 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC16.02■□□□□ 0.16
BDNFP23560 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC16.02■□□□□ 0.16
BDNFP23560 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
BDNFP23560 AC010328.2-201ENST00000597698 1111 ntBASIC16.02■□□□□ 0.16
BDNFP23560 TECR-220ENST00000600083 1204 ntTSL 2 BASIC16.02■□□□□ 0.16
BDNFP23560 AC009542.2-202ENST00000619004 1067 ntBASIC16.02■□□□□ 0.16
BDNFP23560 SERF2-217ENST00000630046 862 ntTSL 5 BASIC16.02■□□□□ 0.16
BDNFP23560 AL603764.1-201ENST00000636452 321 ntBASIC16.02■□□□□ 0.16
BDNFP23560 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
BDNFP23560 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
BDNFP23560 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
BDNFP23560 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC16.02■□□□□ 0.15
BDNFP23560 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.02■□□□□ 0.15
BDNFP23560 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
BDNFP23560 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
BDNFP23560 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.15
BDNFP23560 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
BDNFP23560 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
BDNFP23560 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
BDNFP23560 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC16.02■□□□□ 0.15
BDNFP23560 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
BDNFP23560 AC013268.4-201ENST00000637413 2228 ntBASIC16.02■□□□□ 0.15
BDNFP23560 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
BDNFP23560 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
BDNFP23560 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC16.02■□□□□ 0.15
BDNFP23560 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC16.02■□□□□ 0.15
BDNFP23560 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
BDNFP23560 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
BDNFP23560 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
BDNFP23560 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
BDNFP23560 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
BDNFP23560 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
BDNFP23560 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC16.01■□□□□ 0.15
BDNFP23560 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
BDNFP23560 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
BDNFP23560 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC16.01■□□□□ 0.15
BDNFP23560 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
BDNFP23560 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
BDNFP23560 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
BDNFP23560 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.01■□□□□ 0.15
BDNFP23560 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
BDNFP23560 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
BDNFP23560 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
BDNFP23560 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
BDNFP23560 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
BDNFP23560 RPF1-202ENST00000370656 724 ntTSL 2 BASIC16.01■□□□□ 0.15
BDNFP23560 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
BDNFP23560 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
BDNFP23560 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
BDNFP23560 PFN2-215ENST00000497148 743 ntTSL 4 BASIC16.01■□□□□ 0.15
BDNFP23560 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC16.01■□□□□ 0.15
BDNFP23560 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC16.01■□□□□ 0.15
BDNFP23560 HNRNPA1P48-202ENST00000565308 961 ntBASIC16.01■□□□□ 0.15
BDNFP23560 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC16.01■□□□□ 0.15
BDNFP23560 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
BDNFP23560 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
BDNFP23560 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
BDNFP23560 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.01■□□□□ 0.15
BDNFP23560 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
BDNFP23560 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
BDNFP23560 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
BDNFP23560 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
BDNFP23560 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC16.01■□□□□ 0.15
BDNFP23560 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
BDNFP23560 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16■□□□□ 0.15
BDNFP23560 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC16■□□□□ 0.15
BDNFP23560 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
BDNFP23560 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
BDNFP23560 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
BDNFP23560 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
BDNFP23560 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC16■□□□□ 0.15
BDNFP23560 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC16■□□□□ 0.15
BDNFP23560 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC16■□□□□ 0.15
BDNFP23560 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC16■□□□□ 0.15
BDNFP23560 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms