Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC18.16■□□□□ 0.5
COL4A1P02462 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A1P02462 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
COL4A1P02462 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.16■□□□□ 0.5
COL4A1P02462 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC18.16■□□□□ 0.5
COL4A1P02462 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A1P02462 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A1P02462 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A1P02462 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A1P02462 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A1P02462 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
COL4A1P02462 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A1P02462 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
COL4A1P02462 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC18.15■□□□□ 0.5
COL4A1P02462 PHBP15-201ENST00000574228 665 ntBASIC18.15■□□□□ 0.5
COL4A1P02462 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC18.15■□□□□ 0.5
COL4A1P02462 AC242376.2-201ENST00000619355 883 ntBASIC18.15■□□□□ 0.5
COL4A1P02462 AC051619.9-201ENST00000623237 597 ntBASIC18.15■□□□□ 0.5
COL4A1P02462 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A1P02462 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
COL4A1P02462 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A1P02462 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.15■□□□□ 0.5
COL4A1P02462 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A1P02462 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC18.15■□□□□ 0.5
COL4A1P02462 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC18.15■□□□□ 0.5
COL4A1P02462 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A1P02462 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A1P02462 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A1P02462 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
COL4A1P02462 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A1P02462 SF1-209ENST00000433274 2317 ntTSL 2 BASIC18.15■□□□□ 0.5
COL4A1P02462 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A1P02462 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC18.15■□□□□ 0.5
COL4A1P02462 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
COL4A1P02462 WASH3P-207ENST00000560956 1394 ntBASIC18.15■□□□□ 0.5
COL4A1P02462 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A1P02462 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A1P02462 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A1P02462 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A1P02462 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A1P02462 AC239868.1-201ENST00000369385 493 ntBASIC18.15■□□□□ 0.5
COL4A1P02462 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A1P02462 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
COL4A1P02462 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC18.15■□□□□ 0.5
COL4A1P02462 RPSAP31-201ENST00000416648 895 ntBASIC18.15■□□□□ 0.5
COL4A1P02462 RPL8P2-201ENST00000430538 502 ntBASIC18.15■□□□□ 0.5
COL4A1P02462 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC18.15■□□□□ 0.5
COL4A1P02462 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC18.15■□□□□ 0.5
COL4A1P02462 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC18.15■□□□□ 0.5
COL4A1P02462 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC18.15■□□□□ 0.5
COL4A1P02462 RBM8B-201ENST00000555532 525 ntBASIC18.15■□□□□ 0.5
COL4A1P02462 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC18.15■□□□□ 0.5
COL4A1P02462 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC18.15■□□□□ 0.5
COL4A1P02462 RN7SL736P-201ENST00000613111 269 ntBASIC18.15■□□□□ 0.5
COL4A1P02462 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
COL4A1P02462 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC18.14■□□□□ 0.5
COL4A1P02462 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC18.14■□□□□ 0.5
COL4A1P02462 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
COL4A1P02462 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A1P02462 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A1P02462 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A1P02462 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A1P02462 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC18.14■□□□□ 0.49
COL4A1P02462 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A1P02462 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC18.14■□□□□ 0.49
COL4A1P02462 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC18.14■□□□□ 0.49
COL4A1P02462 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A1P02462 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.49
COL4A1P02462 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC18.14■□□□□ 0.49
COL4A1P02462 AL022334.2-201ENST00000610000 484 ntBASIC18.14■□□□□ 0.49
COL4A1P02462 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC18.14■□□□□ 0.49
COL4A1P02462 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A1P02462 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A1P02462 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC18.14■□□□□ 0.49
COL4A1P02462 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A1P02462 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A1P02462 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A1P02462 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A1P02462 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A1P02462 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC18.14■□□□□ 0.49
COL4A1P02462 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
COL4A1P02462 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.49
COL4A1P02462 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A1P02462 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A1P02462 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A1P02462 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A1P02462 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A1P02462 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A1P02462 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A1P02462 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A1P02462 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC18.13■□□□□ 0.49
COL4A1P02462 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC18.13■□□□□ 0.49
COL4A1P02462 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A1P02462 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A1P02462 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A1P02462 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A1P02462 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A1P02462 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL4A1P02462 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC18.13■□□□□ 0.49
COL4A1P02462 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms