Protein–RNA interactions for Protein: Q9BY42

RTFDC1, Protein RTF2 homolog, humanhuman

Predicted RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1Q9BY42 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
RTFDC1Q9BY42 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RTFDC1Q9BY42 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC18.24■□□□□ 0.51
RTFDC1Q9BY42 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC18.24■□□□□ 0.51
RTFDC1Q9BY42 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
RTFDC1Q9BY42 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC18.24■□□□□ 0.51
RTFDC1Q9BY42 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC18.24■□□□□ 0.51
RTFDC1Q9BY42 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC18.24■□□□□ 0.51
RTFDC1Q9BY42 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC18.24■□□□□ 0.51
RTFDC1Q9BY42 PGAM1P5-201ENST00000548011 764 ntBASIC18.24■□□□□ 0.51
RTFDC1Q9BY42 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
RTFDC1Q9BY42 AC026803.1-201ENST00000569130 274 ntBASIC18.24■□□□□ 0.51
RTFDC1Q9BY42 AC005962.1-201ENST00000584100 773 ntBASIC18.24■□□□□ 0.51
RTFDC1Q9BY42 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC18.24■□□□□ 0.51
RTFDC1Q9BY42 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC18.24■□□□□ 0.51
RTFDC1Q9BY42 YRDCP1-201ENST00000621419 643 ntBASIC18.24■□□□□ 0.51
RTFDC1Q9BY42 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC18.24■□□□□ 0.51
RTFDC1Q9BY42 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
RTFDC1Q9BY42 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RTFDC1Q9BY42 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
RTFDC1Q9BY42 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RTFDC1Q9BY42 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC18.24■□□□□ 0.51
RTFDC1Q9BY42 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RTFDC1Q9BY42 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
RTFDC1Q9BY42 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC18.24■□□□□ 0.51
RTFDC1Q9BY42 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC18.24■□□□□ 0.51
RTFDC1Q9BY42 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
RTFDC1Q9BY42 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 AC136759.1-202ENST00000530858 2194 ntBASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 AC012508.2-201ENST00000567613 1472 ntBASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 AL627231.1-201ENST00000394467 1125 ntBASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 LBH-202ENST00000401506 485 ntTSL 3 BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 AC078991.1-201ENST00000437297 610 ntBASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 AC103810.10-201ENST00000606504 343 ntBASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 MEG3_2.1-201ENST00000611456 105 ntBASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 MIR6720-201ENST00000611664 98 ntBASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC18.23■□□□□ 0.51
RTFDC1Q9BY42 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
RTFDC1Q9BY42 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
RTFDC1Q9BY42 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RTFDC1Q9BY42 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.22■□□□□ 0.51
RTFDC1Q9BY42 KRT8P21-201ENST00000430398 1491 ntBASIC18.22■□□□□ 0.51
RTFDC1Q9BY42 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC18.22■□□□□ 0.51
RTFDC1Q9BY42 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
RTFDC1Q9BY42 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC18.22■□□□□ 0.51
RTFDC1Q9BY42 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC18.22■□□□□ 0.51
RTFDC1Q9BY42 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RTFDC1Q9BY42 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC18.22■□□□□ 0.51
RTFDC1Q9BY42 OR2K2-202ENST00000374428 1038 ntBASIC18.22■□□□□ 0.51
RTFDC1Q9BY42 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
RTFDC1Q9BY42 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RTFDC1Q9BY42 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
RTFDC1Q9BY42 CFL1-206ENST00000527344 962 ntTSL 2 BASIC18.22■□□□□ 0.51
RTFDC1Q9BY42 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC18.22■□□□□ 0.51
RTFDC1Q9BY42 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
RTFDC1Q9BY42 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RTFDC1Q9BY42 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC18.22■□□□□ 0.51
RTFDC1Q9BY42 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RTFDC1Q9BY42 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC18.22■□□□□ 0.51
RTFDC1Q9BY42 AC138894.2-201ENST00000602838 371 ntBASIC18.22■□□□□ 0.51
RTFDC1Q9BY42 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC18.22■□□□□ 0.51
RTFDC1Q9BY42 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC18.22■□□□□ 0.51
RTFDC1Q9BY42 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RTFDC1Q9BY42 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
RTFDC1Q9BY42 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RTFDC1Q9BY42 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
RTFDC1Q9BY42 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
RTFDC1Q9BY42 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
RTFDC1Q9BY42 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms