Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 APOA1-205ENST00000375329 927 ntTSL 2 BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 MIR658-201ENST00000385210 100 ntBASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 C1QBPP1-201ENST00000400117 770 ntBASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 HIST1H2BPS3-201ENST00000419683 341 ntBASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 VDAC1P7-201ENST00000462417 847 ntBASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 TDH-203ENST00000531764 1110 ntBASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 AC022188.1-201ENST00000620960 1664 ntBASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CLIP3Q96DZ5 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 RAC2-202ENST00000401529 569 ntTSL 4 BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 AC079776.1-201ENST00000401540 1152 ntBASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 AC007274.1-201ENST00000439805 662 ntBASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 ENPP7P5-201ENST00000541031 1031 ntBASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 AL139385.1-201ENST00000611744 3272 ntBASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 AC112504.1-201ENST00000623415 1841 ntBASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CLIP3Q96DZ5 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 ACE-203ENST00000413513 2237 ntTSL 2 BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms