Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
USP54Q70EL1 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
USP54Q70EL1 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
USP54Q70EL1 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP54Q70EL1 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC19.69■□□□□ 0.74
USP54Q70EL1 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP54Q70EL1 AL136172.1-201ENST00000598590 1394 ntBASIC19.69■□□□□ 0.74
USP54Q70EL1 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
USP54Q70EL1 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP54Q70EL1 AP000356.3-201ENST00000382243 753 ntBASIC19.69■□□□□ 0.74
USP54Q70EL1 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
USP54Q70EL1 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
USP54Q70EL1 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
USP54Q70EL1 BANF1P3-201ENST00000412556 261 ntBASIC19.69■□□□□ 0.74
USP54Q70EL1 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC19.69■□□□□ 0.74
USP54Q70EL1 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC19.69■□□□□ 0.74
USP54Q70EL1 AP002803.1-201ENST00000528836 498 ntBASIC19.69■□□□□ 0.74
USP54Q70EL1 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC19.69■□□□□ 0.74
USP54Q70EL1 MIR4649-201ENST00000582839 64 ntBASIC19.69■□□□□ 0.74
USP54Q70EL1 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC19.69■□□□□ 0.74
USP54Q70EL1 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
USP54Q70EL1 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC19.69■□□□□ 0.74
USP54Q70EL1 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP54Q70EL1 AC007950.2-201ENST00000615045 2347 ntBASIC19.69■□□□□ 0.74
USP54Q70EL1 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP54Q70EL1 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP54Q70EL1 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP54Q70EL1 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC19.69■□□□□ 0.74
USP54Q70EL1 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP54Q70EL1 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
USP54Q70EL1 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
USP54Q70EL1 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
USP54Q70EL1 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC19.69■□□□□ 0.74
USP54Q70EL1 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP54Q70EL1 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC19.69■□□□□ 0.74
USP54Q70EL1 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
USP54Q70EL1 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP54Q70EL1 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
USP54Q70EL1 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USP54Q70EL1 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP54Q70EL1 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC19.68■□□□□ 0.74
USP54Q70EL1 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC19.68■□□□□ 0.74
USP54Q70EL1 MIR6842-201ENST00000612539 65 ntBASIC19.68■□□□□ 0.74
USP54Q70EL1 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
USP54Q70EL1 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC19.68■□□□□ 0.74
USP54Q70EL1 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP54Q70EL1 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
USP54Q70EL1 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.68■□□□□ 0.74
USP54Q70EL1 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC19.68■□□□□ 0.74
USP54Q70EL1 AL109954.1-202ENST00000564051 2148 ntBASIC19.68■□□□□ 0.74
USP54Q70EL1 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USP54Q70EL1 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP54Q70EL1 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
USP54Q70EL1 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC19.68■□□□□ 0.74
USP54Q70EL1 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP54Q70EL1 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
USP54Q70EL1 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP54Q70EL1 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USP54Q70EL1 AL627422.1-201ENST00000434104 580 ntBASIC19.68■□□□□ 0.74
USP54Q70EL1 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC19.68■□□□□ 0.74
USP54Q70EL1 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
USP54Q70EL1 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC19.68■□□□□ 0.74
USP54Q70EL1 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USP54Q70EL1 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USP54Q70EL1 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC19.68■□□□□ 0.74
USP54Q70EL1 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC19.68■□□□□ 0.74
USP54Q70EL1 AC124068.2-201ENST00000569473 1109 ntBASIC19.68■□□□□ 0.74
USP54Q70EL1 MIR4750-201ENST00000584564 56 ntBASIC19.68■□□□□ 0.74
USP54Q70EL1 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC19.68■□□□□ 0.74
USP54Q70EL1 AC090386.2-201ENST00000623010 1039 ntBASIC19.68■□□□□ 0.74
USP54Q70EL1 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USP54Q70EL1 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC19.68■□□□□ 0.74
USP54Q70EL1 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP54Q70EL1 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP54Q70EL1 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USP54Q70EL1 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP54Q70EL1 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
USP54Q70EL1 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USP54Q70EL1 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USP54Q70EL1 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP54Q70EL1 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USP54Q70EL1 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
USP54Q70EL1 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USP54Q70EL1 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC19.67■□□□□ 0.74
USP54Q70EL1 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USP54Q70EL1 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
USP54Q70EL1 LCK-206ENST00000373564 2137 ntTSL 5 BASIC19.67■□□□□ 0.74
USP54Q70EL1 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USP54Q70EL1 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP54Q70EL1 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
USP54Q70EL1 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC19.67■□□□□ 0.74
USP54Q70EL1 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC19.67■□□□□ 0.74
USP54Q70EL1 AC026320.2-201ENST00000434379 478 ntBASIC19.67■□□□□ 0.74
USP54Q70EL1 RHEB-207ENST00000496004 744 ntTSL 2 BASIC19.67■□□□□ 0.74
USP54Q70EL1 NEU3-207ENST00000534628 746 ntTSL 2 BASIC19.67■□□□□ 0.74
USP54Q70EL1 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USP54Q70EL1 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP54Q70EL1 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP54Q70EL1 LINC01783-202ENST00000614408 828 ntBASIC19.67■□□□□ 0.74
USP54Q70EL1 BX284668.2-205ENST00000619677 828 ntBASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms