Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CSB-PGBD3P0DP91 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC20.05■□□□□ 0.8
CSB-PGBD3P0DP91 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CSB-PGBD3P0DP91 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC20.05■□□□□ 0.8
CSB-PGBD3P0DP91 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC20.05■□□□□ 0.8
CSB-PGBD3P0DP91 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC20.05■□□□□ 0.8
CSB-PGBD3P0DP91 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC20.05■□□□□ 0.8
CSB-PGBD3P0DP91 AC008805.1-201ENST00000590892 364 ntBASIC20.05■□□□□ 0.8
CSB-PGBD3P0DP91 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC20.05■□□□□ 0.8
CSB-PGBD3P0DP91 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CSB-PGBD3P0DP91 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CSB-PGBD3P0DP91 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CSB-PGBD3P0DP91 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CSB-PGBD3P0DP91 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CSB-PGBD3P0DP91 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CSB-PGBD3P0DP91 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CSB-PGBD3P0DP91 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
CSB-PGBD3P0DP91 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CSB-PGBD3P0DP91 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC20.05■□□□□ 0.8
CSB-PGBD3P0DP91 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC20.05■□□□□ 0.8
CSB-PGBD3P0DP91 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CSB-PGBD3P0DP91 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
CSB-PGBD3P0DP91 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CSB-PGBD3P0DP91 PES1-204ENST00000402284 2144 ntTSL 5 BASIC20.05■□□□□ 0.8
CSB-PGBD3P0DP91 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CSB-PGBD3P0DP91 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
CSB-PGBD3P0DP91 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CSB-PGBD3P0DP91 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CSB-PGBD3P0DP91 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CSB-PGBD3P0DP91 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CSB-PGBD3P0DP91 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CSB-PGBD3P0DP91 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CSB-PGBD3P0DP91 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CSB-PGBD3P0DP91 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CSB-PGBD3P0DP91 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC20.04■□□□□ 0.8
CSB-PGBD3P0DP91 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC20.04■□□□□ 0.8
CSB-PGBD3P0DP91 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
CSB-PGBD3P0DP91 AK6-201ENST00000380818 1183 ntTSL 2 BASIC20.04■□□□□ 0.8
CSB-PGBD3P0DP91 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC20.04■□□□□ 0.8
CSB-PGBD3P0DP91 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CSB-PGBD3P0DP91 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC20.04■□□□□ 0.8
CSB-PGBD3P0DP91 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
CSB-PGBD3P0DP91 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC20.04■□□□□ 0.8
CSB-PGBD3P0DP91 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CSB-PGBD3P0DP91 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC20.04■□□□□ 0.8
CSB-PGBD3P0DP91 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC20.04■□□□□ 0.8
CSB-PGBD3P0DP91 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC20.04■□□□□ 0.8
CSB-PGBD3P0DP91 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CSB-PGBD3P0DP91 AC020910.5-201ENST00000623668 1865 ntBASIC20.04■□□□□ 0.8
CSB-PGBD3P0DP91 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CSB-PGBD3P0DP91 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CSB-PGBD3P0DP91 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC20.04■□□□□ 0.8
CSB-PGBD3P0DP91 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CSB-PGBD3P0DP91 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CSB-PGBD3P0DP91 CICP13-201ENST00000422015 2789 ntBASIC20.04■□□□□ 0.8
CSB-PGBD3P0DP91 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CSB-PGBD3P0DP91 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC20.04■□□□□ 0.8
CSB-PGBD3P0DP91 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CSB-PGBD3P0DP91 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC20.03■□□□□ 0.8
CSB-PGBD3P0DP91 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC20.03■□□□□ 0.8
CSB-PGBD3P0DP91 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CSB-PGBD3P0DP91 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CSB-PGBD3P0DP91 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC20.03■□□□□ 0.8
CSB-PGBD3P0DP91 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CSB-PGBD3P0DP91 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC20.03■□□□□ 0.8
CSB-PGBD3P0DP91 AC104784.1-201ENST00000473096 294 ntBASIC20.03■□□□□ 0.8
CSB-PGBD3P0DP91 AC019193.1-201ENST00000506678 823 ntBASIC20.03■□□□□ 0.8
CSB-PGBD3P0DP91 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CSB-PGBD3P0DP91 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
CSB-PGBD3P0DP91 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC20.03■□□□□ 0.8
CSB-PGBD3P0DP91 AC073352.2-201ENST00000609385 439 ntBASIC20.03■□□□□ 0.8
CSB-PGBD3P0DP91 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC20.03■□□□□ 0.8
CSB-PGBD3P0DP91 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC20.03■□□□□ 0.8
CSB-PGBD3P0DP91 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
CSB-PGBD3P0DP91 CDK7-214ENST00000626796 358 ntTSL 5 BASIC20.03■□□□□ 0.8
CSB-PGBD3P0DP91 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC20.03■□□□□ 0.8
CSB-PGBD3P0DP91 AC006453.1-201ENST00000636037 1257 ntBASIC20.03■□□□□ 0.8
CSB-PGBD3P0DP91 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CSB-PGBD3P0DP91 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC20.03■□□□□ 0.8
CSB-PGBD3P0DP91 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CSB-PGBD3P0DP91 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC20.03■□□□□ 0.8
CSB-PGBD3P0DP91 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CSB-PGBD3P0DP91 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CSB-PGBD3P0DP91 AL137783.1-201ENST00000623494 1896 ntBASIC20.03■□□□□ 0.8
CSB-PGBD3P0DP91 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CSB-PGBD3P0DP91 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC20.02■□□□□ 0.8
CSB-PGBD3P0DP91 AC009090.5-201ENST00000624886 2285 ntBASIC20.02■□□□□ 0.8
CSB-PGBD3P0DP91 AC011840.2-201ENST00000563063 1520 ntBASIC20.02■□□□□ 0.8
CSB-PGBD3P0DP91 AMT-204ENST00000427987 1646 ntTSL 5 BASIC20.02■□□□□ 0.8
CSB-PGBD3P0DP91 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CSB-PGBD3P0DP91 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CSB-PGBD3P0DP91 BLK-205ENST00000529894 2017 ntTSL 5 BASIC20.02■□□□□ 0.8
CSB-PGBD3P0DP91 WT1-209ENST00000530998 2421 ntTSL 2 BASIC20.02■□□□□ 0.8
CSB-PGBD3P0DP91 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CSB-PGBD3P0DP91 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC20.02■□□□□ 0.8
CSB-PGBD3P0DP91 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC20.02■□□□□ 0.8
CSB-PGBD3P0DP91 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC20.02■□□□□ 0.8
CSB-PGBD3P0DP91 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC20.02■□□□□ 0.8
CSB-PGBD3P0DP91 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC20.02■□□□□ 0.8
CSB-PGBD3P0DP91 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms