Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC17.07■□□□□ 0.32
MSH4O15457 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC17.07■□□□□ 0.32
MSH4O15457 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC17.07■□□□□ 0.32
MSH4O15457 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC17.07■□□□□ 0.32
MSH4O15457 RPS15-202ENST00000585665 467 ntTSL 3 BASIC17.07■□□□□ 0.32
MSH4O15457 BNIP3P29-201ENST00000598302 571 ntBASIC17.07■□□□□ 0.32
MSH4O15457 AC011447.5-201ENST00000616168 564 ntBASIC17.07■□□□□ 0.32
MSH4O15457 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
MSH4O15457 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSH4O15457 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSH4O15457 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
MSH4O15457 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSH4O15457 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSH4O15457 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC17.07■□□□□ 0.32
MSH4O15457 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
MSH4O15457 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
MSH4O15457 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC17.07■□□□□ 0.32
MSH4O15457 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
MSH4O15457 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSH4O15457 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
MSH4O15457 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC17.07■□□□□ 0.32
MSH4O15457 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
MSH4O15457 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSH4O15457 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSH4O15457 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSH4O15457 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC17.06■□□□□ 0.32
MSH4O15457 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSH4O15457 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSH4O15457 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC17.06■□□□□ 0.32
MSH4O15457 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
MSH4O15457 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
MSH4O15457 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC17.06■□□□□ 0.32
MSH4O15457 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSH4O15457 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
MSH4O15457 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSH4O15457 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
MSH4O15457 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSH4O15457 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
MSH4O15457 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSH4O15457 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC17.06■□□□□ 0.32
MSH4O15457 CD8B2-202ENST00000417670 633 ntBASIC17.06■□□□□ 0.32
MSH4O15457 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
MSH4O15457 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC17.06■□□□□ 0.32
MSH4O15457 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
MSH4O15457 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC17.06■□□□□ 0.32
MSH4O15457 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC17.06■□□□□ 0.32
MSH4O15457 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC17.06■□□□□ 0.32
MSH4O15457 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC17.06■□□□□ 0.32
MSH4O15457 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSH4O15457 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSH4O15457 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
MSH4O15457 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSH4O15457 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC17.06■□□□□ 0.32
MSH4O15457 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSH4O15457 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSH4O15457 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSH4O15457 AC023090.2-201ENST00000625182 2110 ntBASIC17.06■□□□□ 0.32
MSH4O15457 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
MSH4O15457 AC011270.2-201ENST00000624293 2550 ntBASIC17.06■□□□□ 0.32
MSH4O15457 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSH4O15457 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
MSH4O15457 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC17.06■□□□□ 0.32
MSH4O15457 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSH4O15457 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSH4O15457 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSH4O15457 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MSH4O15457 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
MSH4O15457 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
MSH4O15457 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
MSH4O15457 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
MSH4O15457 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
MSH4O15457 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
MSH4O15457 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
MSH4O15457 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
MSH4O15457 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC17.05■□□□□ 0.32
MSH4O15457 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC17.05■□□□□ 0.32
MSH4O15457 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC17.05■□□□□ 0.32
MSH4O15457 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC17.05■□□□□ 0.32
MSH4O15457 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
MSH4O15457 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
MSH4O15457 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
MSH4O15457 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
MSH4O15457 MIR1202-201ENST00000408529 83 ntBASIC17.05■□□□□ 0.32
MSH4O15457 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
MSH4O15457 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
MSH4O15457 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC17.05■□□□□ 0.32
MSH4O15457 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
MSH4O15457 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC17.05■□□□□ 0.32
MSH4O15457 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC17.05■□□□□ 0.32
MSH4O15457 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC17.05■□□□□ 0.32
MSH4O15457 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
MSH4O15457 Six3os1_5.1-201ENST00000611000 271 ntBASIC17.05■□□□□ 0.32
MSH4O15457 AC008687.7-202ENST00000637404 953 ntBASIC17.05■□□□□ 0.32
MSH4O15457 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
MSH4O15457 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC17.05■□□□□ 0.32
MSH4O15457 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
MSH4O15457 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
MSH4O15457 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
MSH4O15457 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
MSH4O15457 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms