Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 AC007787.1-201ENST00000588095 1583 ntBASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 LCK-206ENST00000373564 2137 ntTSL 5 BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 AL645937.2-201ENST00000396808 931 ntBASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 AC104457.1-201ENST00000401024 814 ntBASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 TDH-203ENST00000531764 1110 ntBASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 PTP4A1P2-201ENST00000546033 454 ntBASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 SAMD11P1-201ENST00000571429 661 ntBASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 MIR5189-201ENST00000577370 114 ntBASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 AP005019.2-201ENST00000615104 511 ntBASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 SBF1P1-201ENST00000444527 5631 ntBASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRIM39Q9HCM9 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
TRIM39Q9HCM9 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC15.21■□□□□ 0.02
TRIM39Q9HCM9 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC15.21■□□□□ 0.02
TRIM39Q9HCM9 USE1-206ENST00000595101 1776 ntTSL 2 BASIC15.21■□□□□ 0.02
TRIM39Q9HCM9 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC15.21■□□□□ 0.02
TRIM39Q9HCM9 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.02
TRIM39Q9HCM9 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
TRIM39Q9HCM9 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
TRIM39Q9HCM9 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
TRIM39Q9HCM9 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC15.21■□□□□ 0.02
TRIM39Q9HCM9 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
TRIM39Q9HCM9 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC15.21■□□□□ 0.02
TRIM39Q9HCM9 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
TRIM39Q9HCM9 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC15.21■□□□□ 0.02
TRIM39Q9HCM9 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC15.21■□□□□ 0.02
TRIM39Q9HCM9 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 AC093525.8-201ENST00000624099 1342 ntBASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 GSN-206ENST00000394353 2311 ntTSL 2 BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 KSR1-207ENST00000578981 748 ntTSL 4 BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 ATF5-205ENST00000600336 682 ntTSL 2 BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 AC104640.1-201ENST00000562617 2109 ntBASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
TRIM39Q9HCM9 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms