Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CPNE4Q96A23 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CPNE4Q96A23 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CPNE4Q96A23 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC13.77□□□□□ -0.2
CPNE4Q96A23 SBF1P1-201ENST00000444527 5631 ntBASIC13.77□□□□□ -0.2
CPNE4Q96A23 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.2
CPNE4Q96A23 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
CPNE4Q96A23 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
CPNE4Q96A23 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.2
CPNE4Q96A23 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
CPNE4Q96A23 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CPNE4Q96A23 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CPNE4Q96A23 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CPNE4Q96A23 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC13.77□□□□□ -0.21
CPNE4Q96A23 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
CPNE4Q96A23 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
CPNE4Q96A23 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CPNE4Q96A23 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CPNE4Q96A23 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
CPNE4Q96A23 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CPNE4Q96A23 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC13.77□□□□□ -0.21
CPNE4Q96A23 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
CPNE4Q96A23 STRN-202ENST00000379213 2254 ntTSL 5 BASIC13.77□□□□□ -0.21
CPNE4Q96A23 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CPNE4Q96A23 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC13.77□□□□□ -0.21
CPNE4Q96A23 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CPNE4Q96A23 R3HDM2P2-201ENST00000401880 2116 ntBASIC13.77□□□□□ -0.21
CPNE4Q96A23 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC13.77□□□□□ -0.21
CPNE4Q96A23 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC13.77□□□□□ -0.21
CPNE4Q96A23 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CPNE4Q96A23 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC13.77□□□□□ -0.21
CPNE4Q96A23 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CPNE4Q96A23 GSAP-205ENST00000430584 600 ntTSL 5 BASIC13.77□□□□□ -0.21
CPNE4Q96A23 ZBTB45P1-201ENST00000452761 1456 ntBASIC13.77□□□□□ -0.21
CPNE4Q96A23 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC13.77□□□□□ -0.21
CPNE4Q96A23 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC13.77□□□□□ -0.21
CPNE4Q96A23 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
CPNE4Q96A23 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CPNE4Q96A23 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CPNE4Q96A23 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
CPNE4Q96A23 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC13.77□□□□□ -0.21
CPNE4Q96A23 AC126365.1-201ENST00000578585 1514 ntBASIC13.77□□□□□ -0.21
CPNE4Q96A23 AC132938.2-201ENST00000579188 680 ntBASIC13.77□□□□□ -0.21
CPNE4Q96A23 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC13.77□□□□□ -0.21
CPNE4Q96A23 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC13.77□□□□□ -0.21
CPNE4Q96A23 AP005019.2-201ENST00000615104 511 ntBASIC13.77□□□□□ -0.21
CPNE4Q96A23 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
CPNE4Q96A23 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
CPNE4Q96A23 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CPNE4Q96A23 AC093525.8-201ENST00000624099 1342 ntBASIC13.77□□□□□ -0.21
CPNE4Q96A23 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC13.77□□□□□ -0.21
CPNE4Q96A23 AC005252.2-201ENST00000624630 1141 ntBASIC13.77□□□□□ -0.21
CPNE4Q96A23 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC13.77□□□□□ -0.21
CPNE4Q96A23 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
CPNE4Q96A23 AL591163.1-201ENST00000641757 987 ntBASIC13.77□□□□□ -0.21
CPNE4Q96A23 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
CPNE4Q96A23 OR2I1P-209ENST00000641730 5365 ntBASIC13.77□□□□□ -0.21
CPNE4Q96A23 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC13.76□□□□□ -0.21
CPNE4Q96A23 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC13.76□□□□□ -0.21
CPNE4Q96A23 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC13.76□□□□□ -0.21
CPNE4Q96A23 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC13.76□□□□□ -0.21
CPNE4Q96A23 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC13.76□□□□□ -0.21
CPNE4Q96A23 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
CPNE4Q96A23 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
CPNE4Q96A23 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CPNE4Q96A23 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CPNE4Q96A23 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CPNE4Q96A23 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CPNE4Q96A23 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CPNE4Q96A23 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC13.76□□□□□ -0.21
CPNE4Q96A23 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC13.76□□□□□ -0.21
CPNE4Q96A23 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC13.76□□□□□ -0.21
CPNE4Q96A23 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CPNE4Q96A23 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
CPNE4Q96A23 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CPNE4Q96A23 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
CPNE4Q96A23 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC13.76□□□□□ -0.21
CPNE4Q96A23 AC104457.1-201ENST00000401024 814 ntBASIC13.76□□□□□ -0.21
CPNE4Q96A23 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC13.76□□□□□ -0.21
CPNE4Q96A23 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC13.76□□□□□ -0.21
CPNE4Q96A23 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC13.76□□□□□ -0.21
CPNE4Q96A23 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
CPNE4Q96A23 KRT18P25-201ENST00000508931 1278 ntBASIC13.76□□□□□ -0.21
CPNE4Q96A23 FUZ-207ENST00000526575 482 ntTSL 4 BASIC13.76□□□□□ -0.21
CPNE4Q96A23 TDH-203ENST00000531764 1110 ntBASIC13.76□□□□□ -0.21
CPNE4Q96A23 MIR5189-201ENST00000577370 114 ntBASIC13.76□□□□□ -0.21
CPNE4Q96A23 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC13.76□□□□□ -0.21
CPNE4Q96A23 IGHV3-72-202ENST00000621503 303 ntBASIC13.76□□□□□ -0.21
CPNE4Q96A23 C18orf15-201ENST00000623680 2534 ntBASIC13.76□□□□□ -0.21
CPNE4Q96A23 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CPNE4Q96A23 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC13.76□□□□□ -0.21
CPNE4Q96A23 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CPNE4Q96A23 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
CPNE4Q96A23 LCK-206ENST00000373564 2137 ntTSL 5 BASIC13.76□□□□□ -0.21
CPNE4Q96A23 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CPNE4Q96A23 AC092384.3-202ENST00000564646 2873 ntBASIC13.76□□□□□ -0.21
CPNE4Q96A23 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CPNE4Q96A23 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CPNE4Q96A23 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CPNE4Q96A23 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms