Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC4.78□□□□□ -1.64
SYNE1Q8NF91 GRM4-205ENST00000538487 4153 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 SDHAP3-202ENST00000515467 728 ntBASIC4.77□□□□□ -1.65
SYNE1Q8NF91 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 ARHGAP45-203ENST00000543365 3750 ntAPPRIS ALT2 TSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 BAIAP2L1-201ENST00000005260 3622 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 KRT8P22-201ENST00000562317 1415 ntBASIC4.77□□□□□ -1.65
SYNE1Q8NF91 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 LBX2-201ENST00000341396 886 ntTSL 3 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 AC007551.1-201ENST00000457394 519 ntBASIC4.77□□□□□ -1.65
SYNE1Q8NF91 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 MED16-204ENST00000395808 3420 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 WARS-232ENST00000556645 2508 ntTSL 5 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 MIR1908-201ENST00000410394 80 ntBASIC4.77□□□□□ -1.65
SYNE1Q8NF91 AC007389.4-201ENST00000454674 793 ntBASIC4.77□□□□□ -1.65
SYNE1Q8NF91 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 AC008687.7-202ENST00000637404 953 ntBASIC4.77□□□□□ -1.65
SYNE1Q8NF91 UNC5CL-201ENST00000244565 3136 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 PHF19-202ENST00000373896 4241 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 AL118508.1-201ENST00000613502 2345 ntBASIC4.77□□□□□ -1.65
SYNE1Q8NF91 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 SH2D5-201ENST00000375031 3705 ntTSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 NME4-207ENST00000450036 985 ntTSL 3 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 AC004898.1-201ENST00000451057 766 ntBASIC4.77□□□□□ -1.65
SYNE1Q8NF91 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 GPR176-201ENST00000299092 3844 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC4.77□□□□□ -1.65
SYNE1Q8NF91 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms