Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
H3F3AP84243 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC13.68□□□□□ -0.22
H3F3AP84243 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC13.68□□□□□ -0.22
H3F3AP84243 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC13.68□□□□□ -0.22
H3F3AP84243 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
H3F3AP84243 SLC9A7P1-201ENST00000554295 3311 ntBASIC13.68□□□□□ -0.22
H3F3AP84243 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
H3F3AP84243 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
H3F3AP84243 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
H3F3AP84243 TCAF2P1-201ENST00000291129 2421 ntBASIC13.68□□□□□ -0.22
H3F3AP84243 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
H3F3AP84243 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
H3F3AP84243 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
H3F3AP84243 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
H3F3AP84243 COPE-202ENST00000349893 948 ntTSL 2 BASIC13.68□□□□□ -0.22
H3F3AP84243 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC13.68□□□□□ -0.22
H3F3AP84243 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC13.68□□□□□ -0.22
H3F3AP84243 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
H3F3AP84243 ACTG1P3-201ENST00000431775 1114 ntBASIC13.68□□□□□ -0.22
H3F3AP84243 AC114812.1-204ENST00000449669 728 ntBASIC13.68□□□□□ -0.22
H3F3AP84243 AC011495.1-201ENST00000498085 584 ntBASIC13.68□□□□□ -0.22
H3F3AP84243 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
H3F3AP84243 NEU3-203ENST00000529024 581 ntTSL 3 BASIC13.68□□□□□ -0.22
H3F3AP84243 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC13.68□□□□□ -0.22
H3F3AP84243 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
H3F3AP84243 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC13.68□□□□□ -0.22
H3F3AP84243 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC13.68□□□□□ -0.22
H3F3AP84243 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
H3F3AP84243 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC13.68□□□□□ -0.22
H3F3AP84243 NID2-208ENST00000617139 3827 ntTSL 5 BASIC13.68□□□□□ -0.22
H3F3AP84243 SRP9-204ENST00000619790 377 ntTSL 2 BASIC13.68□□□□□ -0.22
H3F3AP84243 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
H3F3AP84243 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC13.68□□□□□ -0.22
H3F3AP84243 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
H3F3AP84243 PCDHGB8P-201ENST00000502926 1973 ntBASIC13.68□□□□□ -0.22
H3F3AP84243 ZEB1-AS1-208ENST00000607166 2503 ntBASIC13.68□□□□□ -0.22
H3F3AP84243 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
H3F3AP84243 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
H3F3AP84243 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC13.68□□□□□ -0.22
H3F3AP84243 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC13.68□□□□□ -0.22
H3F3AP84243 REXO1L2P-201ENST00000425429 2069 ntBASIC13.68□□□□□ -0.22
H3F3AP84243 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
H3F3AP84243 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
H3F3AP84243 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
H3F3AP84243 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC13.68□□□□□ -0.22
H3F3AP84243 USE1-206ENST00000595101 1776 ntTSL 2 BASIC13.68□□□□□ -0.22
H3F3AP84243 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
H3F3AP84243 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
H3F3AP84243 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
H3F3AP84243 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC13.68□□□□□ -0.22
H3F3AP84243 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
H3F3AP84243 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
H3F3AP84243 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
H3F3AP84243 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
H3F3AP84243 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
H3F3AP84243 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
H3F3AP84243 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
H3F3AP84243 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC13.67□□□□□ -0.22
H3F3AP84243 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
H3F3AP84243 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
H3F3AP84243 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
H3F3AP84243 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC13.67□□□□□ -0.22
H3F3AP84243 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
H3F3AP84243 CU639417.3-201ENST00000624240 1404 ntBASIC13.67□□□□□ -0.22
H3F3AP84243 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
H3F3AP84243 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
H3F3AP84243 APOA1-205ENST00000375329 927 ntTSL 2 BASIC13.67□□□□□ -0.22
H3F3AP84243 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
H3F3AP84243 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
H3F3AP84243 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
H3F3AP84243 AL139094.1-201ENST00000405549 1188 ntBASIC13.67□□□□□ -0.22
H3F3AP84243 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC13.67□□□□□ -0.22
H3F3AP84243 NME2P1-201ENST00000426182 414 ntBASIC13.67□□□□□ -0.22
H3F3AP84243 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC13.67□□□□□ -0.22
H3F3AP84243 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC13.67□□□□□ -0.22
H3F3AP84243 HLA-K-203ENST00000430151 1046 ntBASIC13.67□□□□□ -0.22
H3F3AP84243 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC13.67□□□□□ -0.22
H3F3AP84243 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
H3F3AP84243 RN7SL752P-201ENST00000463779 287 ntBASIC13.67□□□□□ -0.22
H3F3AP84243 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
H3F3AP84243 AP001582.1-201ENST00000525856 295 ntBASIC13.67□□□□□ -0.22
H3F3AP84243 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
H3F3AP84243 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
H3F3AP84243 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
H3F3AP84243 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC13.67□□□□□ -0.22
H3F3AP84243 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC13.67□□□□□ -0.22
H3F3AP84243 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
H3F3AP84243 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
H3F3AP84243 METTL26-214ENST00000614890 801 ntTSL 3 BASIC13.67□□□□□ -0.22
H3F3AP84243 AC105233.6-201ENST00000642093 218 ntBASIC13.67□□□□□ -0.22
H3F3AP84243 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
H3F3AP84243 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
H3F3AP84243 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
H3F3AP84243 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
H3F3AP84243 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC13.67□□□□□ -0.22
H3F3AP84243 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
H3F3AP84243 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC13.67□□□□□ -0.22
H3F3AP84243 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
H3F3AP84243 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
H3F3AP84243 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms