Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
LIM2P55344 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC14.51□□□□□ -0.09
LIM2P55344 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
LIM2P55344 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
LIM2P55344 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC14.51□□□□□ -0.09
LIM2P55344 AP000845.1-201ENST00000581677 2131 ntBASIC14.51□□□□□ -0.09
LIM2P55344 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LIM2P55344 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LIM2P55344 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC14.51□□□□□ -0.09
LIM2P55344 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
LIM2P55344 LINC00552-201ENST00000625151 2579 ntBASIC14.51□□□□□ -0.09
LIM2P55344 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LIM2P55344 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LIM2P55344 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LIM2P55344 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC14.51□□□□□ -0.09
LIM2P55344 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
LIM2P55344 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LIM2P55344 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC14.51□□□□□ -0.09
LIM2P55344 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
LIM2P55344 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LIM2P55344 AC007292.2-201ENST00000593524 1812 ntBASIC14.51□□□□□ -0.09
LIM2P55344 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LIM2P55344 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LIM2P55344 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LIM2P55344 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LIM2P55344 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
LIM2P55344 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
LIM2P55344 AC098614.1-201ENST00000368528 745 ntBASIC14.51□□□□□ -0.09
LIM2P55344 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
LIM2P55344 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LIM2P55344 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC14.51□□□□□ -0.09
LIM2P55344 AL035633.1-201ENST00000406139 838 ntBASIC14.51□□□□□ -0.09
LIM2P55344 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
LIM2P55344 AL162726.2-201ENST00000438986 1017 ntBASIC14.51□□□□□ -0.09
LIM2P55344 TAF8-206ENST00000472818 719 ntTSL 2 BASIC14.51□□□□□ -0.09
LIM2P55344 AP005018.1-201ENST00000525475 301 ntBASIC14.51□□□□□ -0.09
LIM2P55344 AP001582.1-201ENST00000525856 295 ntBASIC14.51□□□□□ -0.09
LIM2P55344 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC14.51□□□□□ -0.09
LIM2P55344 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
LIM2P55344 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
LIM2P55344 IFT20-206ENST00000578122 834 ntTSL 2 BASIC14.51□□□□□ -0.09
LIM2P55344 IFT20-208ENST00000578985 831 ntTSL 3 BASIC14.51□□□□□ -0.09
LIM2P55344 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.51□□□□□ -0.09
LIM2P55344 BX539320.1-201ENST00000623759 877 ntBASIC14.51□□□□□ -0.09
LIM2P55344 CU634019.7-201ENST00000624153 1185 ntBASIC14.51□□□□□ -0.09
LIM2P55344 FP236241.2-201ENST00000624906 1185 ntBASIC14.51□□□□□ -0.09
LIM2P55344 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC14.51□□□□□ -0.09
LIM2P55344 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LIM2P55344 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC14.51□□□□□ -0.09
LIM2P55344 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
LIM2P55344 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LIM2P55344 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
LIM2P55344 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
LIM2P55344 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LIM2P55344 FGD5P1-202ENST00000614866 2498 ntBASIC14.51□□□□□ -0.09
LIM2P55344 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LIM2P55344 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC14.51□□□□□ -0.09
LIM2P55344 AL359258.3-201ENST00000622910 2331 ntBASIC14.5□□□□□ -0.09
LIM2P55344 AGER-206ENST00000375070 1463 ntTSL 5 BASIC14.5□□□□□ -0.09
LIM2P55344 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LIM2P55344 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
LIM2P55344 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC14.5□□□□□ -0.09
LIM2P55344 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
LIM2P55344 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
LIM2P55344 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
LIM2P55344 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC14.5□□□□□ -0.09
LIM2P55344 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
LIM2P55344 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LIM2P55344 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LIM2P55344 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
LIM2P55344 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
LIM2P55344 AJ011931.1-201ENST00000618749 2492 ntBASIC14.5□□□□□ -0.09
LIM2P55344 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LIM2P55344 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LIM2P55344 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC14.5□□□□□ -0.09
LIM2P55344 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC14.5□□□□□ -0.09
LIM2P55344 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC14.5□□□□□ -0.09
LIM2P55344 RN7SL692P-201ENST00000464677 288 ntBASIC14.5□□□□□ -0.09
LIM2P55344 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC14.5□□□□□ -0.09
LIM2P55344 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC14.5□□□□□ -0.09
LIM2P55344 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC14.5□□□□□ -0.09
LIM2P55344 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC14.5□□□□□ -0.09
LIM2P55344 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC14.5□□□□□ -0.09
LIM2P55344 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC14.5□□□□□ -0.09
LIM2P55344 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
LIM2P55344 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
LIM2P55344 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LIM2P55344 AL158070.2-201ENST00000623713 1621 ntBASIC14.5□□□□□ -0.09
LIM2P55344 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LIM2P55344 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LIM2P55344 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
LIM2P55344 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
LIM2P55344 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LIM2P55344 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
LIM2P55344 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
LIM2P55344 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
LIM2P55344 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LIM2P55344 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LIM2P55344 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LIM2P55344 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms