Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC16.71■□□□□ 0.27
CLCN3P51790 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC16.71■□□□□ 0.27
CLCN3P51790 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC16.71■□□□□ 0.27
CLCN3P51790 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
CLCN3P51790 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLCN3P51790 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
CLCN3P51790 RN7SL713P-201ENST00000582127 302 ntBASIC16.71■□□□□ 0.27
CLCN3P51790 AL096828.3-201ENST00000615354 462 ntBASIC16.71■□□□□ 0.27
CLCN3P51790 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
CLCN3P51790 KRT8P4-201ENST00000509735 1454 ntBASIC16.71■□□□□ 0.27
CLCN3P51790 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLCN3P51790 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLCN3P51790 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLCN3P51790 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLCN3P51790 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLCN3P51790 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC16.71■□□□□ 0.27
CLCN3P51790 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLCN3P51790 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC16.71■□□□□ 0.27
CLCN3P51790 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CLCN3P51790 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.26
CLCN3P51790 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
CLCN3P51790 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLCN3P51790 TMBIM7P-203ENST00000641617 1718 ntBASIC16.7■□□□□ 0.26
CLCN3P51790 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLCN3P51790 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.7■□□□□ 0.26
CLCN3P51790 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
CLCN3P51790 AP000845.1-201ENST00000581677 2131 ntBASIC16.7■□□□□ 0.26
CLCN3P51790 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CLCN3P51790 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLCN3P51790 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLCN3P51790 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLCN3P51790 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLCN3P51790 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC16.7■□□□□ 0.26
CLCN3P51790 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CLCN3P51790 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC16.7■□□□□ 0.26
CLCN3P51790 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CLCN3P51790 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLCN3P51790 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLCN3P51790 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLCN3P51790 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLCN3P51790 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CLCN3P51790 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLCN3P51790 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CLCN3P51790 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLCN3P51790 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CLCN3P51790 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC16.7■□□□□ 0.26
CLCN3P51790 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC16.7■□□□□ 0.26
CLCN3P51790 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLCN3P51790 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLCN3P51790 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLCN3P51790 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CLCN3P51790 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLCN3P51790 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLCN3P51790 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CLCN3P51790 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLCN3P51790 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CLCN3P51790 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.7■□□□□ 0.26
CLCN3P51790 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CLCN3P51790 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC16.7■□□□□ 0.26
CLCN3P51790 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLCN3P51790 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLCN3P51790 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CLCN3P51790 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.7■□□□□ 0.26
CLCN3P51790 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CLCN3P51790 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC16.7■□□□□ 0.26
CLCN3P51790 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLCN3P51790 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLCN3P51790 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
CLCN3P51790 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLCN3P51790 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLCN3P51790 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLCN3P51790 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLCN3P51790 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLCN3P51790 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLCN3P51790 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLCN3P51790 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC16.69■□□□□ 0.26
CLCN3P51790 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLCN3P51790 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
CLCN3P51790 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLCN3P51790 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLCN3P51790 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLCN3P51790 RPS3-201ENST00000278572 907 ntTSL 3 BASIC16.69■□□□□ 0.26
CLCN3P51790 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLCN3P51790 TISP43-201ENST00000409793 538 ntTSL 4 BASIC16.69■□□□□ 0.26
CLCN3P51790 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC16.69■□□□□ 0.26
CLCN3P51790 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC16.69■□□□□ 0.26
CLCN3P51790 RGS5-214ENST00000429865 754 ntTSL 3 BASIC16.69■□□□□ 0.26
CLCN3P51790 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC16.69■□□□□ 0.26
CLCN3P51790 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC16.69■□□□□ 0.26
CLCN3P51790 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLCN3P51790 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLCN3P51790 CD74-212ENST00000524315 584 ntTSL 5 BASIC16.69■□□□□ 0.26
CLCN3P51790 RNF41-210ENST00000552244 716 ntTSL 3 BASIC16.69■□□□□ 0.26
CLCN3P51790 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC16.69■□□□□ 0.26
CLCN3P51790 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
CLCN3P51790 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CLCN3P51790 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
CLCN3P51790 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLCN3P51790 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CLCN3P51790 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms