Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
MSX2P35548 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
MSX2P35548 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC14.66□□□□□ -0.06
MSX2P35548 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14.66□□□□□ -0.06
MSX2P35548 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
MSX2P35548 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC14.66□□□□□ -0.06
MSX2P35548 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC14.66□□□□□ -0.06
MSX2P35548 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
MSX2P35548 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
MSX2P35548 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
MSX2P35548 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC14.66□□□□□ -0.06
MSX2P35548 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
MSX2P35548 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
MSX2P35548 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
MSX2P35548 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
MSX2P35548 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
MSX2P35548 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
MSX2P35548 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC14.66□□□□□ -0.06
MSX2P35548 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC14.66□□□□□ -0.06
MSX2P35548 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
MSX2P35548 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC14.66□□□□□ -0.06
MSX2P35548 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
MSX2P35548 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
MSX2P35548 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
MSX2P35548 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
MSX2P35548 PP14571-201ENST00000404327 934 ntTSL 2 BASIC14.66□□□□□ -0.06
MSX2P35548 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC14.66□□□□□ -0.06
MSX2P35548 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC14.66□□□□□ -0.06
MSX2P35548 AL031284.1-201ENST00000419297 478 ntBASIC14.66□□□□□ -0.06
MSX2P35548 GHSR-202ENST00000427970 912 ntBASIC14.66□□□□□ -0.06
MSX2P35548 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC14.66□□□□□ -0.06
MSX2P35548 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC14.66□□□□□ -0.06
MSX2P35548 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC14.66□□□□□ -0.06
MSX2P35548 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC14.66□□□□□ -0.06
MSX2P35548 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC14.66□□□□□ -0.06
MSX2P35548 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
MSX2P35548 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC14.66□□□□□ -0.06
MSX2P35548 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
MSX2P35548 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
MSX2P35548 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC14.66□□□□□ -0.06
MSX2P35548 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
MSX2P35548 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC14.66□□□□□ -0.06
MSX2P35548 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC14.66□□□□□ -0.06
MSX2P35548 RARRES2P8-201ENST00000566335 367 ntBASIC14.66□□□□□ -0.06
MSX2P35548 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC14.66□□□□□ -0.06
MSX2P35548 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC14.66□□□□□ -0.06
MSX2P35548 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC14.66□□□□□ -0.06
MSX2P35548 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
MSX2P35548 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
MSX2P35548 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
MSX2P35548 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
MSX2P35548 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
MSX2P35548 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
MSX2P35548 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
MSX2P35548 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
MSX2P35548 AC015802.1-201ENST00000588104 1449 ntBASIC14.66□□□□□ -0.06
MSX2P35548 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
MSX2P35548 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC14.66□□□□□ -0.06
MSX2P35548 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
MSX2P35548 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC14.65□□□□□ -0.06
MSX2P35548 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
MSX2P35548 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
MSX2P35548 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
MSX2P35548 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
MSX2P35548 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
MSX2P35548 AC067750.1-201ENST00000608826 6545 ntBASIC14.65□□□□□ -0.06
MSX2P35548 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
MSX2P35548 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
MSX2P35548 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC14.65□□□□□ -0.06
MSX2P35548 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
MSX2P35548 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
MSX2P35548 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
MSX2P35548 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
MSX2P35548 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
MSX2P35548 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC14.65□□□□□ -0.06
MSX2P35548 REXO1L4P-201ENST00000605109 1937 ntBASIC14.65□□□□□ -0.06
MSX2P35548 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC14.65□□□□□ -0.06
MSX2P35548 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
MSX2P35548 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
MSX2P35548 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
MSX2P35548 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
MSX2P35548 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
MSX2P35548 FAM220BP-201ENST00000377689 816 ntBASIC14.65□□□□□ -0.06
MSX2P35548 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC14.65□□□□□ -0.06
MSX2P35548 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC14.65□□□□□ -0.06
MSX2P35548 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
MSX2P35548 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
MSX2P35548 IGHV3-22-201ENST00000520721 359 ntBASIC14.65□□□□□ -0.06
MSX2P35548 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC14.65□□□□□ -0.06
MSX2P35548 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC14.65□□□□□ -0.06
MSX2P35548 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC14.65□□□□□ -0.06
MSX2P35548 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
MSX2P35548 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC14.65□□□□□ -0.06
MSX2P35548 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
MSX2P35548 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
MSX2P35548 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
MSX2P35548 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC14.65□□□□□ -0.06
MSX2P35548 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
MSX2P35548 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
MSX2P35548 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms