Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC15.68■□□□□ 0.1
HMGA1P17096 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC15.68■□□□□ 0.1
HMGA1P17096 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
HMGA1P17096 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HMGA1P17096 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HMGA1P17096 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
HMGA1P17096 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HMGA1P17096 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HMGA1P17096 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HMGA1P17096 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HMGA1P17096 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HMGA1P17096 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HMGA1P17096 AC003102.2-201ENST00000589195 1469 ntBASIC15.68■□□□□ 0.1
HMGA1P17096 WASH3P-207ENST00000560956 1394 ntBASIC15.68■□□□□ 0.1
HMGA1P17096 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
HMGA1P17096 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
HMGA1P17096 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HMGA1P17096 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC15.68■□□□□ 0.1
HMGA1P17096 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC15.68■□□□□ 0.1
HMGA1P17096 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC15.68■□□□□ 0.1
HMGA1P17096 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC15.68■□□□□ 0.1
HMGA1P17096 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC15.68■□□□□ 0.1
HMGA1P17096 CDC23-208ENST00000505120 455 ntTSL 3 BASIC15.68■□□□□ 0.1
HMGA1P17096 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC15.68■□□□□ 0.1
HMGA1P17096 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC15.68■□□□□ 0.1
HMGA1P17096 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HMGA1P17096 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC15.68■□□□□ 0.1
HMGA1P17096 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC15.68■□□□□ 0.1
HMGA1P17096 AC009955.4-201ENST00000597192 544 ntBASIC15.68■□□□□ 0.1
HMGA1P17096 AL136301.1-201ENST00000615830 422 ntBASIC15.68■□□□□ 0.1
HMGA1P17096 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC15.68■□□□□ 0.1
HMGA1P17096 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
HMGA1P17096 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HMGA1P17096 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HMGA1P17096 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HMGA1P17096 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC15.68■□□□□ 0.1
HMGA1P17096 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
HMGA1P17096 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HMGA1P17096 HYMAI-201ENST00000635591 3347 ntBASIC15.68■□□□□ 0.1
HMGA1P17096 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC15.68■□□□□ 0.1
HMGA1P17096 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HMGA1P17096 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGA1P17096 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HMGA1P17096 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
HMGA1P17096 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
HMGA1P17096 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC15.67■□□□□ 0.1
HMGA1P17096 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGA1P17096 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGA1P17096 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HMGA1P17096 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGA1P17096 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC15.67■□□□□ 0.1
HMGA1P17096 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HMGA1P17096 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HMGA1P17096 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HMGA1P17096 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGA1P17096 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGA1P17096 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGA1P17096 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HMGA1P17096 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HMGA1P17096 AC010141.1-201ENST00000411585 623 ntBASIC15.67■□□□□ 0.1
HMGA1P17096 REEP1-202ENST00000453231 940 ntTSL 2 BASIC15.67■□□□□ 0.1
HMGA1P17096 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC15.67■□□□□ 0.1
HMGA1P17096 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HMGA1P17096 AL162426.1-201ENST00000624141 743 ntBASIC15.67■□□□□ 0.1
HMGA1P17096 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC15.67■□□□□ 0.1
HMGA1P17096 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGA1P17096 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HMGA1P17096 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HMGA1P17096 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGA1P17096 CELP-203ENST00000624767 2414 ntTSL 5 BASIC15.67■□□□□ 0.1
HMGA1P17096 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HMGA1P17096 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGA1P17096 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HMGA1P17096 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
HMGA1P17096 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGA1P17096 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGA1P17096 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HMGA1P17096 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGA1P17096 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGA1P17096 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGA1P17096 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGA1P17096 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC15.66■□□□□ 0.1
HMGA1P17096 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGA1P17096 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC15.66■□□□□ 0.1
HMGA1P17096 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
HMGA1P17096 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGA1P17096 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HMGA1P17096 KRT8P29-201ENST00000420409 1371 ntBASIC15.66■□□□□ 0.1
HMGA1P17096 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
HMGA1P17096 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HMGA1P17096 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC15.66■□□□□ 0.1
HMGA1P17096 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC15.66■□□□□ 0.1
HMGA1P17096 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGA1P17096 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGA1P17096 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGA1P17096 AC016700.1-201ENST00000429424 312 ntBASIC15.66■□□□□ 0.1
HMGA1P17096 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGA1P17096 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
HMGA1P17096 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGA1P17096 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms