Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
SPTA1P02549 CHTF8-207ENST00000520529 475 ntTSL 2 BASIC13.81□□□□□ -0.2
SPTA1P02549 AC012158.2-201ENST00000536546 354 ntBASIC13.81□□□□□ -0.2
SPTA1P02549 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SPTA1P02549 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC13.81□□□□□ -0.2
SPTA1P02549 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC13.81□□□□□ -0.2
SPTA1P02549 NAP1L6-202ENST00000641404 1222 ntBASIC13.81□□□□□ -0.2
SPTA1P02549 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SPTA1P02549 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC13.81□□□□□ -0.2
SPTA1P02549 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC13.81□□□□□ -0.2
SPTA1P02549 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
SPTA1P02549 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
SPTA1P02549 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC13.8□□□□□ -0.2
SPTA1P02549 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
SPTA1P02549 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SPTA1P02549 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
SPTA1P02549 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
SPTA1P02549 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC13.8□□□□□ -0.2
SPTA1P02549 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
SPTA1P02549 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
SPTA1P02549 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
SPTA1P02549 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC13.8□□□□□ -0.2
SPTA1P02549 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
SPTA1P02549 AK6-201ENST00000380818 1183 ntTSL 2 BASIC13.8□□□□□ -0.2
SPTA1P02549 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SPTA1P02549 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC13.8□□□□□ -0.2
SPTA1P02549 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
SPTA1P02549 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC13.8□□□□□ -0.2
SPTA1P02549 RTN3P1-201ENST00000536295 711 ntBASIC13.8□□□□□ -0.2
SPTA1P02549 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SPTA1P02549 FOS-204ENST00000554617 796 ntTSL 2 BASIC13.8□□□□□ -0.2
SPTA1P02549 AC027139.1-201ENST00000565286 951 ntBASIC13.8□□□□□ -0.2
SPTA1P02549 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC13.8□□□□□ -0.2
SPTA1P02549 NAT9-211ENST00000580632 799 ntTSL 3 BASIC13.8□□□□□ -0.2
SPTA1P02549 HPN-206ENST00000597419 1212 ntTSL 5 BASIC13.8□□□□□ -0.2
SPTA1P02549 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC13.8□□□□□ -0.2
SPTA1P02549 AC103691.2-201ENST00000618824 433 ntBASIC13.8□□□□□ -0.2
SPTA1P02549 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC13.8□□□□□ -0.2
SPTA1P02549 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SPTA1P02549 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC13.8□□□□□ -0.2
SPTA1P02549 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SPTA1P02549 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
SPTA1P02549 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SPTA1P02549 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SPTA1P02549 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC13.8□□□□□ -0.2
SPTA1P02549 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC13.8□□□□□ -0.2
SPTA1P02549 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC13.8□□□□□ -0.2
SPTA1P02549 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SPTA1P02549 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC13.8□□□□□ -0.2
SPTA1P02549 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC13.8□□□□□ -0.2
SPTA1P02549 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
SPTA1P02549 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SPTA1P02549 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SPTA1P02549 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SPTA1P02549 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC13.8□□□□□ -0.2
SPTA1P02549 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
SPTA1P02549 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
SPTA1P02549 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC13.8□□□□□ -0.2
SPTA1P02549 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SPTA1P02549 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SPTA1P02549 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SPTA1P02549 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SPTA1P02549 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC13.8□□□□□ -0.2
SPTA1P02549 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
SPTA1P02549 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC13.8□□□□□ -0.2
SPTA1P02549 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC13.8□□□□□ -0.2
SPTA1P02549 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC13.8□□□□□ -0.2
SPTA1P02549 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC13.8□□□□□ -0.2
SPTA1P02549 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC13.8□□□□□ -0.2
SPTA1P02549 AC005332.8-201ENST00000622750 2735 ntBASIC13.8□□□□□ -0.2
SPTA1P02549 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
SPTA1P02549 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SPTA1P02549 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
SPTA1P02549 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
SPTA1P02549 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
SPTA1P02549 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SPTA1P02549 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SPTA1P02549 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC13.79□□□□□ -0.2
SPTA1P02549 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC13.79□□□□□ -0.2
SPTA1P02549 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC13.79□□□□□ -0.2
SPTA1P02549 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SPTA1P02549 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
SPTA1P02549 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SPTA1P02549 AC009093.2-202ENST00000620513 2079 ntBASIC13.79□□□□□ -0.2
SPTA1P02549 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC13.79□□□□□ -0.2
SPTA1P02549 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC13.79□□□□□ -0.2
SPTA1P02549 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC13.79□□□□□ -0.2
SPTA1P02549 AC018695.6-201ENST00000614011 534 ntBASIC13.79□□□□□ -0.2
SPTA1P02549 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC13.79□□□□□ -0.2
SPTA1P02549 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC13.79□□□□□ -0.2
SPTA1P02549 AL158070.2-201ENST00000623713 1621 ntBASIC13.79□□□□□ -0.2
SPTA1P02549 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC13.79□□□□□ -0.2
SPTA1P02549 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SPTA1P02549 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
SPTA1P02549 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SPTA1P02549 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
SPTA1P02549 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC13.79□□□□□ -0.2
SPTA1P02549 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SPTA1P02549 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
SPTA1P02549 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms