Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL3A1P02461 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
COL3A1P02461 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC19.79■□□□□ 0.76
COL3A1P02461 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL3A1P02461 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC19.79■□□□□ 0.76
COL3A1P02461 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC19.79■□□□□ 0.76
COL3A1P02461 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC19.79■□□□□ 0.76
COL3A1P02461 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL3A1P02461 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL3A1P02461 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC19.79■□□□□ 0.76
COL3A1P02461 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL3A1P02461 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL3A1P02461 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC19.79■□□□□ 0.76
COL3A1P02461 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL3A1P02461 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
COL3A1P02461 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL3A1P02461 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC19.79■□□□□ 0.76
COL3A1P02461 FAM8A2P-201ENST00000528813 1142 ntBASIC19.79■□□□□ 0.76
COL3A1P02461 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL3A1P02461 AC103988.2-201ENST00000561804 725 ntBASIC19.79■□□□□ 0.76
COL3A1P02461 AC013355.1-201ENST00000562625 723 ntBASIC19.79■□□□□ 0.76
COL3A1P02461 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC19.79■□□□□ 0.76
COL3A1P02461 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
COL3A1P02461 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL3A1P02461 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL3A1P02461 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL3A1P02461 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC19.78■□□□□ 0.76
COL3A1P02461 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC19.78■□□□□ 0.76
COL3A1P02461 KHSRPP1-201ENST00000427983 1768 ntBASIC19.78■□□□□ 0.76
COL3A1P02461 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC19.78■□□□□ 0.76
COL3A1P02461 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
COL3A1P02461 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL3A1P02461 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL3A1P02461 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
COL3A1P02461 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL3A1P02461 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL3A1P02461 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL3A1P02461 AC092135.3-201ENST00000624151 1846 ntBASIC19.78■□□□□ 0.76
COL3A1P02461 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL3A1P02461 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
COL3A1P02461 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
COL3A1P02461 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
COL3A1P02461 AC016700.1-201ENST00000429424 312 ntBASIC19.78■□□□□ 0.76
COL3A1P02461 NKAIN1P1-201ENST00000435754 582 ntBASIC19.78■□□□□ 0.76
COL3A1P02461 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC19.78■□□□□ 0.76
COL3A1P02461 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC19.78■□□□□ 0.76
COL3A1P02461 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC19.78■□□□□ 0.76
COL3A1P02461 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC19.78■□□□□ 0.76
COL3A1P02461 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL3A1P02461 MIR3615-201ENST00000581999 87 ntBASIC19.78■□□□□ 0.76
COL3A1P02461 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL3A1P02461 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC19.78■□□□□ 0.76
COL3A1P02461 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
COL3A1P02461 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC19.78■□□□□ 0.76
COL3A1P02461 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
COL3A1P02461 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
COL3A1P02461 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL3A1P02461 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL3A1P02461 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL3A1P02461 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL3A1P02461 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
COL3A1P02461 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL3A1P02461 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL3A1P02461 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL3A1P02461 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
COL3A1P02461 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL3A1P02461 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL3A1P02461 SDCCAG3P2-201ENST00000326105 1023 ntBASIC19.77■□□□□ 0.76
COL3A1P02461 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
COL3A1P02461 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL3A1P02461 KRT18P36-201ENST00000411618 1276 ntBASIC19.77■□□□□ 0.76
COL3A1P02461 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC19.77■□□□□ 0.76
COL3A1P02461 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL3A1P02461 ATP6V0CP2-201ENST00000469409 207 ntBASIC19.77■□□□□ 0.76
COL3A1P02461 HIST2H2BC-201ENST00000498492 580 ntBASIC19.77■□□□□ 0.76
COL3A1P02461 AC022217.1-201ENST00000521069 738 ntBASIC19.77■□□□□ 0.76
COL3A1P02461 HNRNPA1P36-201ENST00000521313 955 ntBASIC19.77■□□□□ 0.76
COL3A1P02461 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC19.77■□□□□ 0.76
COL3A1P02461 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC19.77■□□□□ 0.76
COL3A1P02461 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC19.77■□□□□ 0.76
COL3A1P02461 AC008825.2-201ENST00000603374 718 ntBASIC19.77■□□□□ 0.76
COL3A1P02461 AL645939.5-201ENST00000606834 243 ntBASIC19.77■□□□□ 0.76
COL3A1P02461 AC007663.3-201ENST00000609632 465 ntBASIC19.77■□□□□ 0.76
COL3A1P02461 AC068587.8-201ENST00000641239 219 ntBASIC19.77■□□□□ 0.76
COL3A1P02461 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL3A1P02461 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC19.77■□□□□ 0.75
COL3A1P02461 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
COL3A1P02461 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
COL3A1P02461 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC19.77■□□□□ 0.75
COL3A1P02461 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
COL3A1P02461 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL3A1P02461 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL3A1P02461 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC19.76■□□□□ 0.75
COL3A1P02461 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL3A1P02461 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC19.76■□□□□ 0.75
COL3A1P02461 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
COL3A1P02461 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL3A1P02461 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL3A1P02461 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL3A1P02461 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms