Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 SLC9A7P1-202ENST00000556476 2239 ntBASIC18.49■□□□□ 0.55
VPS53Q5VIR6 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS53Q5VIR6 LINC00528-201ENST00000600723 2160 ntBASIC18.48■□□□□ 0.55
VPS53Q5VIR6 LINC01101-201ENST00000622953 1884 ntBASIC18.48■□□□□ 0.55
VPS53Q5VIR6 GPI-205ENST00000586425 1799 ntTSL 5 BASIC18.48■□□□□ 0.55
VPS53Q5VIR6 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VPS53Q5VIR6 HNRNPA1P48-201ENST00000562726 1377 ntBASIC18.48■□□□□ 0.55
VPS53Q5VIR6 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
VPS53Q5VIR6 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VPS53Q5VIR6 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS53Q5VIR6 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
VPS53Q5VIR6 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC18.48■□□□□ 0.55
VPS53Q5VIR6 AC134915.1-201ENST00000426461 574 ntBASIC18.48■□□□□ 0.55
VPS53Q5VIR6 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VPS53Q5VIR6 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC18.48■□□□□ 0.55
VPS53Q5VIR6 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC18.48■□□□□ 0.55
VPS53Q5VIR6 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC18.48■□□□□ 0.55
VPS53Q5VIR6 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
VPS53Q5VIR6 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
VPS53Q5VIR6 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS53Q5VIR6 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VPS53Q5VIR6 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS53Q5VIR6 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS53Q5VIR6 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VPS53Q5VIR6 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC18.48■□□□□ 0.55
VPS53Q5VIR6 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC18.48■□□□□ 0.55
VPS53Q5VIR6 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC18.48■□□□□ 0.55
VPS53Q5VIR6 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
VPS53Q5VIR6 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC18.48■□□□□ 0.55
VPS53Q5VIR6 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
VPS53Q5VIR6 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS53Q5VIR6 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS53Q5VIR6 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
VPS53Q5VIR6 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS53Q5VIR6 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 ZBED1P1-201ENST00000502364 1930 ntBASIC18.47■□□□□ 0.55
VPS53Q5VIR6 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 PNKD-204ENST00000436005 978 ntTSL 5 BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS53Q5VIR6 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms