Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RNF4P78317 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RNF4P78317 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RNF4P78317 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC14.19□□□□□ -0.14
RNF4P78317 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RNF4P78317 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RNF4P78317 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC14.19□□□□□ -0.14
RNF4P78317 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RNF4P78317 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC14.19□□□□□ -0.14
RNF4P78317 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RNF4P78317 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC14.19□□□□□ -0.14
RNF4P78317 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RNF4P78317 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RNF4P78317 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC14.18□□□□□ -0.14
RNF4P78317 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
RNF4P78317 TSPY26P-202ENST00000565928 3884 ntBASIC14.18□□□□□ -0.14
RNF4P78317 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RNF4P78317 KRT8P35-201ENST00000483942 1338 ntBASIC14.18□□□□□ -0.14
RNF4P78317 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
RNF4P78317 AC023024.2-201ENST00000623561 1993 ntBASIC14.18□□□□□ -0.14
RNF4P78317 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
RNF4P78317 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
RNF4P78317 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RNF4P78317 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RNF4P78317 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
RNF4P78317 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RNF4P78317 AC023824.1-201ENST00000562945 2975 ntBASIC14.18□□□□□ -0.14
RNF4P78317 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
RNF4P78317 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC14.18□□□□□ -0.14
RNF4P78317 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RNF4P78317 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RNF4P78317 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
RNF4P78317 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
RNF4P78317 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
RNF4P78317 GK-202ENST00000378941 458 ntTSL 3 BASIC14.18□□□□□ -0.14
RNF4P78317 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
RNF4P78317 AL139094.1-201ENST00000405549 1188 ntBASIC14.18□□□□□ -0.14
RNF4P78317 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC14.18□□□□□ -0.14
RNF4P78317 HIST1H2BPS3-201ENST00000419683 341 ntBASIC14.18□□□□□ -0.14
RNF4P78317 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
RNF4P78317 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC14.18□□□□□ -0.14
RNF4P78317 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14.18□□□□□ -0.14
RNF4P78317 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RNF4P78317 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.18□□□□□ -0.14
RNF4P78317 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RNF4P78317 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RNF4P78317 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC14.18□□□□□ -0.14
RNF4P78317 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC14.18□□□□□ -0.14
RNF4P78317 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RNF4P78317 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
RNF4P78317 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RNF4P78317 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RNF4P78317 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RNF4P78317 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RNF4P78317 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
RNF4P78317 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RNF4P78317 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RNF4P78317 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RNF4P78317 AC022532.1-201ENST00000624563 1728 ntBASIC14.18□□□□□ -0.14
RNF4P78317 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RNF4P78317 AC012508.2-201ENST00000567613 1472 ntBASIC14.18□□□□□ -0.14
RNF4P78317 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RNF4P78317 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RNF4P78317 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RNF4P78317 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RNF4P78317 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC14.17□□□□□ -0.14
RNF4P78317 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
RNF4P78317 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC14.17□□□□□ -0.14
RNF4P78317 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
RNF4P78317 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RNF4P78317 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
RNF4P78317 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC14.17□□□□□ -0.14
RNF4P78317 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RNF4P78317 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RNF4P78317 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC14.17□□□□□ -0.14
RNF4P78317 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RNF4P78317 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
RNF4P78317 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RNF4P78317 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RNF4P78317 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
RNF4P78317 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.17□□□□□ -0.14
RNF4P78317 RPS15-201ENST00000233609 534 ntTSL 2 BASIC14.17□□□□□ -0.14
RNF4P78317 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RNF4P78317 OR8S1-201ENST00000310194 1080 ntBASIC14.17□□□□□ -0.14
RNF4P78317 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
RNF4P78317 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC14.17□□□□□ -0.14
RNF4P78317 AC079776.1-201ENST00000401540 1152 ntBASIC14.17□□□□□ -0.14
RNF4P78317 ACTBP8-201ENST00000403258 1108 ntBASIC14.17□□□□□ -0.14
RNF4P78317 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC14.17□□□□□ -0.14
RNF4P78317 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC14.17□□□□□ -0.14
RNF4P78317 AC106760.1-201ENST00000508690 800 ntBASIC14.17□□□□□ -0.14
RNF4P78317 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC14.17□□□□□ -0.14
RNF4P78317 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC14.17□□□□□ -0.14
RNF4P78317 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC14.17□□□□□ -0.14
RNF4P78317 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
RNF4P78317 APRT-204ENST00000563655 709 ntTSL 5 BASIC14.17□□□□□ -0.14
RNF4P78317 ORC6-206ENST00000568364 888 ntTSL 5 BASIC14.17□□□□□ -0.14
RNF4P78317 RPS15-205ENST00000586686 562 ntTSL 5 BASIC14.17□□□□□ -0.14
RNF4P78317 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC14.17□□□□□ -0.14
RNF4P78317 RPS15-208ENST00000591804 711 ntTSL 5 BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms