Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
BDNFP23560 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC16.11■□□□□ 0.17
BDNFP23560 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
BDNFP23560 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
BDNFP23560 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
BDNFP23560 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
BDNFP23560 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
BDNFP23560 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.11■□□□□ 0.17
BDNFP23560 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
BDNFP23560 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC16.11■□□□□ 0.17
BDNFP23560 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
BDNFP23560 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
BDNFP23560 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC16.11■□□□□ 0.17
BDNFP23560 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
BDNFP23560 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC16.11■□□□□ 0.17
BDNFP23560 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC16.11■□□□□ 0.17
BDNFP23560 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC16.11■□□□□ 0.17
BDNFP23560 MPV17-206ENST00000402722 827 ntTSL 3 BASIC16.11■□□□□ 0.17
BDNFP23560 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC16.11■□□□□ 0.17
BDNFP23560 FO681548.1-201ENST00000455617 1132 ntBASIC16.11■□□□□ 0.17
BDNFP23560 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC16.11■□□□□ 0.17
BDNFP23560 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
BDNFP23560 AC022616.1-201ENST00000518688 554 ntBASIC16.11■□□□□ 0.17
BDNFP23560 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC16.11■□□□□ 0.17
BDNFP23560 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC16.11■□□□□ 0.17
BDNFP23560 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC16.11■□□□□ 0.17
BDNFP23560 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC16.11■□□□□ 0.17
BDNFP23560 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC16.11■□□□□ 0.17
BDNFP23560 AC138951.2-201ENST00000623455 1161 ntBASIC16.11■□□□□ 0.17
BDNFP23560 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
BDNFP23560 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
BDNFP23560 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
BDNFP23560 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
BDNFP23560 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
BDNFP23560 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
BDNFP23560 AL360270.3-201ENST00000609118 1348 ntBASIC16.11■□□□□ 0.17
BDNFP23560 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.11■□□□□ 0.17
BDNFP23560 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
BDNFP23560 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC16.11■□□□□ 0.17
BDNFP23560 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.11■□□□□ 0.17
BDNFP23560 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
BDNFP23560 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
BDNFP23560 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
BDNFP23560 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
BDNFP23560 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
BDNFP23560 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
BDNFP23560 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
BDNFP23560 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
BDNFP23560 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC16.1■□□□□ 0.17
BDNFP23560 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
BDNFP23560 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
BDNFP23560 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
BDNFP23560 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
BDNFP23560 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC16.1■□□□□ 0.17
BDNFP23560 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC16.1■□□□□ 0.17
BDNFP23560 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.1■□□□□ 0.17
BDNFP23560 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
BDNFP23560 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
BDNFP23560 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
BDNFP23560 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
BDNFP23560 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
BDNFP23560 AHRR-211ENST00000515206 462 ntTSL 5 BASIC16.1■□□□□ 0.17
BDNFP23560 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC16.1■□□□□ 0.17
BDNFP23560 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC16.1■□□□□ 0.17
BDNFP23560 ECM1P1-201ENST00000604092 1279 ntBASIC16.1■□□□□ 0.17
BDNFP23560 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
BDNFP23560 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
BDNFP23560 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
BDNFP23560 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.1■□□□□ 0.17
BDNFP23560 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC16.1■□□□□ 0.17
BDNFP23560 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC16.1■□□□□ 0.17
BDNFP23560 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
BDNFP23560 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC16.1■□□□□ 0.17
BDNFP23560 PES1-204ENST00000402284 2144 ntTSL 5 BASIC16.1■□□□□ 0.17
BDNFP23560 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
BDNFP23560 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
BDNFP23560 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC16.1■□□□□ 0.17
BDNFP23560 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
BDNFP23560 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
BDNFP23560 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC16.1■□□□□ 0.17
BDNFP23560 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
BDNFP23560 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.1■□□□□ 0.17
BDNFP23560 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC16.1■□□□□ 0.17
BDNFP23560 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC16.1■□□□□ 0.17
BDNFP23560 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
BDNFP23560 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
BDNFP23560 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
BDNFP23560 PPT1-215ENST00000641471 2368 ntBASIC16.09■□□□□ 0.17
BDNFP23560 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC16.09■□□□□ 0.17
BDNFP23560 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
BDNFP23560 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.09■□□□□ 0.17
BDNFP23560 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
BDNFP23560 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC16.09■□□□□ 0.17
BDNFP23560 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.09■□□□□ 0.17
BDNFP23560 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
BDNFP23560 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
BDNFP23560 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
BDNFP23560 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
BDNFP23560 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
BDNFP23560 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms