Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC18.06■□□□□ 0.48
HMGB1P09429 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
HMGB1P09429 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB1P09429 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC18.06■□□□□ 0.48
HMGB1P09429 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB1P09429 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB1P09429 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC18.06■□□□□ 0.48
HMGB1P09429 AGER-206ENST00000375070 1463 ntTSL 5 BASIC18.06■□□□□ 0.48
HMGB1P09429 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB1P09429 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB1P09429 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB1P09429 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB1P09429 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB1P09429 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB1P09429 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HMGB1P09429 PCDHA3-202ENST00000532566 4594 ntBASIC18.05■□□□□ 0.48
HMGB1P09429 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC18.05■□□□□ 0.48
HMGB1P09429 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
HMGB1P09429 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC18.05■□□□□ 0.48
HMGB1P09429 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC18.05■□□□□ 0.48
HMGB1P09429 MIR661-201ENST00000384842 89 ntBASIC18.05■□□□□ 0.48
HMGB1P09429 HLA-K-203ENST00000430151 1046 ntBASIC18.05■□□□□ 0.48
HMGB1P09429 MYCLP2-201ENST00000449268 967 ntBASIC18.05■□□□□ 0.48
HMGB1P09429 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
HMGB1P09429 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
HMGB1P09429 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGB1P09429 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC18.05■□□□□ 0.48
HMGB1P09429 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC18.05■□□□□ 0.48
HMGB1P09429 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC18.05■□□□□ 0.48
HMGB1P09429 AC133539.2-201ENST00000604757 467 ntBASIC18.05■□□□□ 0.48
HMGB1P09429 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC18.05■□□□□ 0.48
HMGB1P09429 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HMGB1P09429 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGB1P09429 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC18.05■□□□□ 0.48
HMGB1P09429 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC18.05■□□□□ 0.48
HMGB1P09429 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGB1P09429 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC18.05■□□□□ 0.48
HMGB1P09429 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGB1P09429 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HMGB1P09429 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC18.05■□□□□ 0.48
HMGB1P09429 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGB1P09429 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
HMGB1P09429 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC18.05■□□□□ 0.48
HMGB1P09429 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGB1P09429 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC18.05■□□□□ 0.48
HMGB1P09429 HNRNPA1P48-201ENST00000562726 1377 ntBASIC18.04■□□□□ 0.48
HMGB1P09429 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC18.04■□□□□ 0.48
HMGB1P09429 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB1P09429 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB1P09429 AL157414.3-201ENST00000624276 1954 ntBASIC18.04■□□□□ 0.48
HMGB1P09429 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB1P09429 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB1P09429 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB1P09429 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB1P09429 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB1P09429 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB1P09429 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB1P09429 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC18.04■□□□□ 0.48
HMGB1P09429 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC18.04■□□□□ 0.48
HMGB1P09429 PIN1P1-201ENST00000412108 996 ntBASIC18.04■□□□□ 0.48
HMGB1P09429 AC002472.2-201ENST00000442739 958 ntBASIC18.04■□□□□ 0.48
HMGB1P09429 OARD1-208ENST00000469104 704 ntTSL 2 BASIC18.04■□□□□ 0.48
HMGB1P09429 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB1P09429 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC18.04■□□□□ 0.48
HMGB1P09429 API5-211ENST00000534695 560 ntTSL 5 BASIC18.04■□□□□ 0.48
HMGB1P09429 AL359711.2-201ENST00000563105 872 ntBASIC18.04■□□□□ 0.48
HMGB1P09429 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC18.04■□□□□ 0.48
HMGB1P09429 CHCHD2P3-201ENST00000603038 451 ntBASIC18.04■□□□□ 0.48
HMGB1P09429 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC18.04■□□□□ 0.48
HMGB1P09429 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB1P09429 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB1P09429 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB1P09429 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
HMGB1P09429 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC18.04■□□□□ 0.48
HMGB1P09429 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC18.04■□□□□ 0.48
HMGB1P09429 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC18.04■□□□□ 0.48
HMGB1P09429 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB1P09429 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB1P09429 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGB1P09429 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
HMGB1P09429 REXO1L5P-201ENST00000622260 2098 ntBASIC18.03■□□□□ 0.48
HMGB1P09429 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
HMGB1P09429 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB1P09429 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB1P09429 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC18.03■□□□□ 0.48
HMGB1P09429 AL390755.1-201ENST00000623716 2027 ntBASIC18.03■□□□□ 0.48
HMGB1P09429 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB1P09429 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB1P09429 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB1P09429 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB1P09429 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC18.03■□□□□ 0.48
HMGB1P09429 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB1P09429 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
HMGB1P09429 AL139094.1-201ENST00000405549 1188 ntBASIC18.03■□□□□ 0.48
HMGB1P09429 AC098850.1-201ENST00000419919 790 ntBASIC18.03■□□□□ 0.48
HMGB1P09429 AC114812.1-204ENST00000449669 728 ntBASIC18.03■□□□□ 0.48
HMGB1P09429 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC18.03■□□□□ 0.48
HMGB1P09429 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGB1P09429 ENPP7P5-201ENST00000541031 1031 ntBASIC18.03■□□□□ 0.48
HMGB1P09429 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms