Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC16.09■□□□□ 0.17
APOEP02649 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
APOEP02649 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
APOEP02649 COX5BP8-201ENST00000416911 349 ntBASIC16.09■□□□□ 0.17
APOEP02649 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC16.09■□□□□ 0.17
APOEP02649 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC16.09■□□□□ 0.17
APOEP02649 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC16.09■□□□□ 0.17
APOEP02649 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC16.09■□□□□ 0.17
APOEP02649 KRT17P7-201ENST00000451704 1104 ntBASIC16.09■□□□□ 0.17
APOEP02649 HNRNPA1P13-201ENST00000510646 963 ntBASIC16.09■□□□□ 0.17
APOEP02649 AC026410.3-201ENST00000514280 936 ntBASIC16.09■□□□□ 0.17
APOEP02649 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
APOEP02649 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC16.09■□□□□ 0.17
APOEP02649 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC16.09■□□□□ 0.17
APOEP02649 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC16.09■□□□□ 0.17
APOEP02649 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC16.09■□□□□ 0.17
APOEP02649 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC16.09■□□□□ 0.17
APOEP02649 AC107373.2-201ENST00000607735 490 ntBASIC16.09■□□□□ 0.17
APOEP02649 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC16.09■□□□□ 0.17
APOEP02649 SRP9-204ENST00000619790 377 ntTSL 2 BASIC16.09■□□□□ 0.17
APOEP02649 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC16.09■□□□□ 0.17
APOEP02649 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC16.09■□□□□ 0.17
APOEP02649 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
APOEP02649 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
APOEP02649 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
APOEP02649 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC16.09■□□□□ 0.17
APOEP02649 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
APOEP02649 DRD5P1-201ENST00000456605 1438 ntBASIC16.09■□□□□ 0.17
APOEP02649 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
APOEP02649 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC16.09■□□□□ 0.17
APOEP02649 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
APOEP02649 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
APOEP02649 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC16.09■□□□□ 0.17
APOEP02649 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
APOEP02649 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
APOEP02649 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC16.08■□□□□ 0.17
APOEP02649 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC16.08■□□□□ 0.17
APOEP02649 C1R-202ENST00000536053 2347 ntTSL 2 BASIC16.08■□□□□ 0.17
APOEP02649 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
APOEP02649 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
APOEP02649 TCAF2P1-201ENST00000291129 2421 ntBASIC16.08■□□□□ 0.17
APOEP02649 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
APOEP02649 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
APOEP02649 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
APOEP02649 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
APOEP02649 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
APOEP02649 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
APOEP02649 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
APOEP02649 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
APOEP02649 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
APOEP02649 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC16.08■□□□□ 0.16
APOEP02649 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC16.08■□□□□ 0.16
APOEP02649 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC16.08■□□□□ 0.16
APOEP02649 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
APOEP02649 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC16.08■□□□□ 0.16
APOEP02649 RBM7-207ENST00000544582 692 ntTSL 3 BASIC16.08■□□□□ 0.16
APOEP02649 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC16.08■□□□□ 0.16
APOEP02649 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC16.08■□□□□ 0.16
APOEP02649 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
APOEP02649 AC124283.3-201ENST00000570869 594 ntBASIC16.08■□□□□ 0.16
APOEP02649 PAM16-204ENST00000571941 674 ntTSL 3 BASIC16.08■□□□□ 0.16
APOEP02649 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC16.08■□□□□ 0.16
APOEP02649 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
APOEP02649 AC093813.1-201ENST00000605066 256 ntBASIC16.08■□□□□ 0.16
APOEP02649 CU634019.7-201ENST00000624153 1185 ntBASIC16.08■□□□□ 0.16
APOEP02649 FP236241.2-201ENST00000624906 1185 ntBASIC16.08■□□□□ 0.16
APOEP02649 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC16.08■□□□□ 0.16
APOEP02649 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
APOEP02649 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
APOEP02649 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
APOEP02649 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
APOEP02649 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
APOEP02649 HNRNPA1P48-201ENST00000562726 1377 ntBASIC16.08■□□□□ 0.16
APOEP02649 KRT8P22-201ENST00000562317 1415 ntBASIC16.08■□□□□ 0.16
APOEP02649 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
APOEP02649 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
APOEP02649 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
APOEP02649 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
APOEP02649 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC16.08■□□□□ 0.16
APOEP02649 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
APOEP02649 LINC02228-204ENST00000642115 2962 ntBASIC16.08■□□□□ 0.16
APOEP02649 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
APOEP02649 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC16.08■□□□□ 0.16
APOEP02649 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
APOEP02649 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
APOEP02649 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
APOEP02649 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
APOEP02649 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
APOEP02649 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
APOEP02649 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
APOEP02649 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.07■□□□□ 0.16
APOEP02649 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
APOEP02649 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
APOEP02649 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
APOEP02649 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
APOEP02649 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
APOEP02649 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
APOEP02649 NME2P1-201ENST00000426182 414 ntBASIC16.07■□□□□ 0.16
APOEP02649 AC005034.1-201ENST00000426657 489 ntBASIC16.07■□□□□ 0.16
APOEP02649 INE1-201ENST00000456273 945 ntBASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms