Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC14.91□□□□□ -0.02
LDLRP01130 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LDLRP01130 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LDLRP01130 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
LDLRP01130 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LDLRP01130 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
LDLRP01130 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC14.91□□□□□ -0.02
LDLRP01130 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LDLRP01130 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
LDLRP01130 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
LDLRP01130 BANP-203ENST00000393207 2438 ntTSL 2 BASIC14.91□□□□□ -0.02
LDLRP01130 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.91□□□□□ -0.02
LDLRP01130 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
LDLRP01130 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC14.91□□□□□ -0.02
LDLRP01130 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDLRP01130 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC14.9□□□□□ -0.02
LDLRP01130 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDLRP01130 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDLRP01130 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC14.9□□□□□ -0.02
LDLRP01130 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.9□□□□□ -0.02
LDLRP01130 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDLRP01130 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
LDLRP01130 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
LDLRP01130 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDLRP01130 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDLRP01130 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDLRP01130 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDLRP01130 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDLRP01130 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
LDLRP01130 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC14.9□□□□□ -0.02
LDLRP01130 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
LDLRP01130 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC14.9□□□□□ -0.02
LDLRP01130 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC14.9□□□□□ -0.02
LDLRP01130 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDLRP01130 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
LDLRP01130 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
LDLRP01130 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC14.9□□□□□ -0.02
LDLRP01130 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDLRP01130 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDLRP01130 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDLRP01130 AC140912.1-201ENST00000577171 1054 ntBASIC14.9□□□□□ -0.02
LDLRP01130 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC14.9□□□□□ -0.02
LDLRP01130 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC14.9□□□□□ -0.02
LDLRP01130 AL138828.2-201ENST00000615812 383 ntBASIC14.9□□□□□ -0.02
LDLRP01130 AC023024.2-201ENST00000623561 1993 ntBASIC14.9□□□□□ -0.02
LDLRP01130 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDLRP01130 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
LDLRP01130 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDLRP01130 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
LDLRP01130 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LDLRP01130 STK33-217ENST00000534493 1895 ntTSL 2 BASIC14.9□□□□□ -0.02
LDLRP01130 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
LDLRP01130 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDLRP01130 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDLRP01130 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDLRP01130 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC14.9□□□□□ -0.02
LDLRP01130 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC14.9□□□□□ -0.02
LDLRP01130 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
LDLRP01130 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC14.9□□□□□ -0.02
LDLRP01130 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LDLRP01130 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDLRP01130 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LDLRP01130 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDLRP01130 AC127383.1-201ENST00000444697 1800 ntBASIC14.89□□□□□ -0.03
LDLRP01130 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LDLRP01130 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC14.89□□□□□ -0.03
LDLRP01130 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDLRP01130 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDLRP01130 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC14.89□□□□□ -0.03
LDLRP01130 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDLRP01130 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDLRP01130 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDLRP01130 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LDLRP01130 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC14.89□□□□□ -0.03
LDLRP01130 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDLRP01130 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDLRP01130 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LDLRP01130 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
LDLRP01130 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDLRP01130 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDLRP01130 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDLRP01130 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC14.89□□□□□ -0.03
LDLRP01130 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC14.89□□□□□ -0.03
LDLRP01130 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
LDLRP01130 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LDLRP01130 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC14.89□□□□□ -0.03
LDLRP01130 MPI-209ENST00000564003 1195 ntTSL 2 BASIC14.89□□□□□ -0.03
LDLRP01130 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC14.89□□□□□ -0.03
LDLRP01130 AL132655.2-201ENST00000596276 594 ntBASIC14.89□□□□□ -0.03
LDLRP01130 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC14.89□□□□□ -0.03
LDLRP01130 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LDLRP01130 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDLRP01130 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDLRP01130 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
LDLRP01130 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
LDLRP01130 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDLRP01130 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDLRP01130 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDLRP01130 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LDLRP01130 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms