Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH5O43196 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
MSH5O43196 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
MSH5O43196 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
MSH5O43196 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH5O43196 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
MSH5O43196 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC21.66■■□□□ 1.06
MSH5O43196 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC21.66■■□□□ 1.06
MSH5O43196 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH5O43196 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
MSH5O43196 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH5O43196 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC21.65■■□□□ 1.06
MSH5O43196 MTND4P23-201ENST00000447723 1363 ntBASIC21.65■■□□□ 1.06
MSH5O43196 AC114876.1-201ENST00000490962 1366 ntBASIC21.65■■□□□ 1.06
MSH5O43196 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC21.65■■□□□ 1.06
MSH5O43196 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH5O43196 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH5O43196 ACAT1-202ENST00000299355 1345 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
MSH5O43196 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH5O43196 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
MSH5O43196 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC21.65■■□□□ 1.06
MSH5O43196 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH5O43196 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH5O43196 COX20P1-201ENST00000366529 357 ntBASIC21.65■■□□□ 1.06
MSH5O43196 BCL2L15-202ENST00000393316 1084 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH5O43196 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
MSH5O43196 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC21.65■■□□□ 1.06
MSH5O43196 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC21.65■■□□□ 1.06
MSH5O43196 LINC00462-201ENST00000425350 962 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
MSH5O43196 PSMD10P1-201ENST00000436861 681 ntBASIC21.65■■□□□ 1.06
MSH5O43196 AC245100.3-201ENST00000441281 285 ntBASIC21.65■■□□□ 1.06
MSH5O43196 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC21.65■■□□□ 1.06
MSH5O43196 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC21.65■■□□□ 1.06
MSH5O43196 SETP4-201ENST00000455717 868 ntBASIC21.65■■□□□ 1.06
MSH5O43196 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC21.65■■□□□ 1.06
MSH5O43196 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC21.65■■□□□ 1.06
MSH5O43196 AC090200.1-201ENST00000522918 590 ntTSL 2 BASIC21.65■■□□□ 1.06
MSH5O43196 MTCYBP20-201ENST00000524239 1129 ntBASIC21.65■■□□□ 1.06
MSH5O43196 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC21.65■■□□□ 1.06
MSH5O43196 MMP17-203ENST00000535004 719 ntTSL 3 BASIC21.65■■□□□ 1.06
MSH5O43196 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH5O43196 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC21.65■■□□□ 1.06
MSH5O43196 AC009119.1-203ENST00000565064 577 ntTSL 4 BASIC21.65■■□□□ 1.06
MSH5O43196 SSH2-210ENST00000582084 560 ntTSL 3 BASIC21.65■■□□□ 1.06
MSH5O43196 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
MSH5O43196 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC21.65■■□□□ 1.06
MSH5O43196 AC139792.1-201ENST00000607051 647 ntBASIC21.65■■□□□ 1.06
MSH5O43196 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC21.65■■□□□ 1.06
MSH5O43196 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC21.65■■□□□ 1.06
MSH5O43196 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
MSH5O43196 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
MSH5O43196 AL590560.3-201ENST00000623350 461 ntBASIC21.65■■□□□ 1.06
MSH5O43196 AC073592.8-201ENST00000624126 511 ntBASIC21.65■■□□□ 1.06
MSH5O43196 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH5O43196 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH5O43196 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
MSH5O43196 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH5O43196 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH5O43196 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
MSH5O43196 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH5O43196 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH5O43196 C4orf33-202ENST00000425929 1588 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
MSH5O43196 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
MSH5O43196 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
MSH5O43196 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
MSH5O43196 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC21.64■■□□□ 1.06
MSH5O43196 MS4A6E-201ENST00000300182 711 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
MSH5O43196 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
MSH5O43196 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
MSH5O43196 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
MSH5O43196 ENSA-206ENST00000361631 725 ntTSL 2 BASIC21.64■■□□□ 1.05
MSH5O43196 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
MSH5O43196 CD81-202ENST00000381036 880 ntTSL 3 BASIC21.64■■□□□ 1.05
MSH5O43196 RPS8-202ENST00000396651 881 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
MSH5O43196 HNRNPA3P1-201ENST00000401429 1139 ntBASIC21.64■■□□□ 1.05
MSH5O43196 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC21.64■■□□□ 1.05
MSH5O43196 MTCYBP39-201ENST00000437562 491 ntBASIC21.64■■□□□ 1.05
MSH5O43196 LINC00271-203ENST00000438618 1202 ntTSL 3 BASIC21.64■■□□□ 1.05
MSH5O43196 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC21.64■■□□□ 1.05
MSH5O43196 MOB1AP2-201ENST00000446060 614 ntBASIC21.64■■□□□ 1.05
MSH5O43196 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
MSH5O43196 HNRNPA3P5-201ENST00000455201 833 ntBASIC21.64■■□□□ 1.05
MSH5O43196 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
MSH5O43196 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC21.64■■□□□ 1.05
MSH5O43196 OR7E121P-201ENST00000494533 1022 ntBASIC21.64■■□□□ 1.05
MSH5O43196 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC21.64■■□□□ 1.05
MSH5O43196 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC21.64■■□□□ 1.05
MSH5O43196 GBP1P1-202ENST00000513638 1234 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
MSH5O43196 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC21.64■■□□□ 1.05
MSH5O43196 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC21.64■■□□□ 1.05
MSH5O43196 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC21.64■■□□□ 1.05
MSH5O43196 HILS1-202ENST00000545329 423 ntBASIC21.64■■□□□ 1.05
MSH5O43196 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC21.64■■□□□ 1.05
MSH5O43196 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
MSH5O43196 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC21.64■■□□□ 1.05
MSH5O43196 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC21.64■■□□□ 1.05
MSH5O43196 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC21.64■■□□□ 1.05
MSH5O43196 AC087241.4-201ENST00000612441 480 ntBASIC21.64■■□□□ 1.05
MSH5O43196 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
MSH5O43196 AC017037.3-201ENST00000625016 472 ntBASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms