Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 SCARNA12-201ENST00000459155 270 ntBASIC25.45■■□□□ 1.66
CUX2O14529 TREHP1-201ENST00000531328 465 ntBASIC25.45■■□□□ 1.66
CUX2O14529 AC068867.1-201ENST00000559855 150 ntBASIC25.45■■□□□ 1.66
CUX2O14529 AC104590.1-201ENST00000560813 648 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
CUX2O14529 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC25.45■■□□□ 1.66
CUX2O14529 MIR2392-201ENST00000584881 84 ntBASIC25.45■■□□□ 1.66
CUX2O14529 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC25.45■■□□□ 1.66
CUX2O14529 CADM1-221ENST00000612235 1042 ntTSL 5 BASIC25.45■■□□□ 1.66
CUX2O14529 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC25.45■■□□□ 1.66
CUX2O14529 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC25.45■■□□□ 1.66
CUX2O14529 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC25.45■■□□□ 1.66
CUX2O14529 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC25.45■■□□□ 1.66
CUX2O14529 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
CUX2O14529 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC25.45■■□□□ 1.66
CUX2O14529 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
CUX2O14529 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
CUX2O14529 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC25.44■■□□□ 1.66
CUX2O14529 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC25.44■■□□□ 1.66
CUX2O14529 AC084364.1-201ENST00000551967 1556 ntBASIC25.44■■□□□ 1.66
CUX2O14529 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC25.44■■□□□ 1.66
CUX2O14529 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC25.44■■□□□ 1.66
CUX2O14529 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC25.44■■□□□ 1.66
CUX2O14529 AC113347.2-201ENST00000512350 279 ntBASIC25.44■■□□□ 1.66
CUX2O14529 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC25.44■■□□□ 1.66
CUX2O14529 DIO3OS-211ENST00000557532 712 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
CUX2O14529 RN7SL357P-201ENST00000581065 298 ntBASIC25.44■■□□□ 1.66
CUX2O14529 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC25.44■■□□□ 1.66
CUX2O14529 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
CUX2O14529 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC25.44■■□□□ 1.66
CUX2O14529 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC25.44■■□□□ 1.66
CUX2O14529 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
CUX2O14529 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC25.44■■□□□ 1.66
CUX2O14529 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC25.44■■□□□ 1.66
CUX2O14529 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
CUX2O14529 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC25.44■■□□□ 1.66
CUX2O14529 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC25.43■■□□□ 1.66
CUX2O14529 RAN-210ENST00000541630 1475 ntTSL 2 BASIC25.43■■□□□ 1.66
CUX2O14529 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC25.43■■□□□ 1.66
CUX2O14529 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC25.43■■□□□ 1.66
CUX2O14529 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
CUX2O14529 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC25.43■■□□□ 1.66
CUX2O14529 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC25.43■■□□□ 1.66
CUX2O14529 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC25.43■■□□□ 1.66
CUX2O14529 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC25.43■■□□□ 1.66
CUX2O14529 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC25.43■■□□□ 1.66
CUX2O14529 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC25.43■■□□□ 1.66
CUX2O14529 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC25.43■■□□□ 1.66
CUX2O14529 HOXC-AS3-203ENST00000514702 368 ntTSL 3 BASIC25.43■■□□□ 1.66
CUX2O14529 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC25.43■■□□□ 1.66
CUX2O14529 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC25.43■■□□□ 1.66
CUX2O14529 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
CUX2O14529 LINC01398-202ENST00000634819 1292 ntTSL 5 BASIC25.43■■□□□ 1.66
CUX2O14529 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC25.43■■□□□ 1.66
CUX2O14529 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC25.43■■□□□ 1.66
CUX2O14529 SERPINA1-209ENST00000449399 1559 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
CUX2O14529 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC25.43■■□□□ 1.66
CUX2O14529 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
CUX2O14529 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
CUX2O14529 TKT-202ENST00000423516 2075 ntTSL 2 BASIC25.43■■□□□ 1.66
CUX2O14529 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC25.43■■□□□ 1.66
CUX2O14529 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
CUX2O14529 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
CUX2O14529 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
CUX2O14529 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
CUX2O14529 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
CUX2O14529 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC25.42■■□□□ 1.66
CUX2O14529 IGHV3-43-201ENST00000434710 434 ntAPPRIS P1 BASIC25.42■■□□□ 1.66
CUX2O14529 TIMMDC1-207ENST00000493694 710 ntTSL 2 BASIC25.42■■□□□ 1.66
CUX2O14529 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC25.42■■□□□ 1.66
CUX2O14529 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC25.42■■□□□ 1.66
CUX2O14529 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC25.42■■□□□ 1.66
CUX2O14529 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC25.42■■□□□ 1.66
CUX2O14529 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC25.42■■□□□ 1.66
CUX2O14529 MIR6893-201ENST00000613458 69 ntBASIC25.42■■□□□ 1.66
CUX2O14529 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC25.42■■□□□ 1.66
CUX2O14529 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
CUX2O14529 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC25.42■■□□□ 1.66
CUX2O14529 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
CUX2O14529 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC25.42■■□□□ 1.66
CUX2O14529 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
CUX2O14529 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
CUX2O14529 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
CUX2O14529 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC25.42■■□□□ 1.66
CUX2O14529 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
CUX2O14529 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC25.42■■□□□ 1.66
CUX2O14529 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
CUX2O14529 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC25.42■■□□□ 1.66
CUX2O14529 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
CUX2O14529 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
CUX2O14529 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC25.42■■□□□ 1.66
CUX2O14529 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
CUX2O14529 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC25.41■■□□□ 1.66
CUX2O14529 CASP2-203ENST00000392925 616 ntTSL 3 BASIC25.41■■□□□ 1.66
CUX2O14529 AC098657.1-201ENST00000416270 1135 ntBASIC25.41■■□□□ 1.66
CUX2O14529 AC108734.2-201ENST00000420887 1069 ntBASIC25.41■■□□□ 1.66
CUX2O14529 MAGEA7P-201ENST00000436482 942 ntBASIC25.41■■□□□ 1.66
CUX2O14529 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC25.41■■□□□ 1.66
CUX2O14529 RN7SL121P-201ENST00000584223 273 ntBASIC25.41■■□□□ 1.66
CUX2O14529 KLKP1-202ENST00000597246 1125 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
CUX2O14529 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC25.41■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms