Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PDLIM1O00151 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
PDLIM1O00151 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PDLIM1O00151 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PDLIM1O00151 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
PDLIM1O00151 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PDLIM1O00151 RGS12-202ENST00000338806 3010 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PDLIM1O00151 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
PDLIM1O00151 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC14.69□□□□□ -0.06
PDLIM1O00151 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PDLIM1O00151 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PDLIM1O00151 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC14.69□□□□□ -0.06
PDLIM1O00151 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PDLIM1O00151 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC14.69□□□□□ -0.06
PDLIM1O00151 DRD2-201ENST00000346454 2433 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PDLIM1O00151 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PDLIM1O00151 AL645939.2-201ENST00000427340 991 ntBASIC14.69□□□□□ -0.06
PDLIM1O00151 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC14.69□□□□□ -0.06
PDLIM1O00151 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PDLIM1O00151 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC14.69□□□□□ -0.06
PDLIM1O00151 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC14.69□□□□□ -0.06
PDLIM1O00151 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC14.69□□□□□ -0.06
PDLIM1O00151 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC14.69□□□□□ -0.06
PDLIM1O00151 IGHV3OR16-6-201ENST00000568775 360 ntBASIC14.69□□□□□ -0.06
PDLIM1O00151 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
PDLIM1O00151 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC14.69□□□□□ -0.06
PDLIM1O00151 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC14.69□□□□□ -0.06
PDLIM1O00151 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC14.69□□□□□ -0.06
PDLIM1O00151 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
PDLIM1O00151 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC14.69□□□□□ -0.06
PDLIM1O00151 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC14.69□□□□□ -0.06
PDLIM1O00151 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
PDLIM1O00151 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PDLIM1O00151 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
PDLIM1O00151 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PDLIM1O00151 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PDLIM1O00151 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
PDLIM1O00151 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PDLIM1O00151 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
PDLIM1O00151 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
PDLIM1O00151 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PDLIM1O00151 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PDLIM1O00151 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PDLIM1O00151 MTHFR-210ENST00000641407 2387 ntBASIC14.69□□□□□ -0.06
PDLIM1O00151 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PDLIM1O00151 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC14.69□□□□□ -0.06
PDLIM1O00151 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PDLIM1O00151 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC14.69□□□□□ -0.06
PDLIM1O00151 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC14.69□□□□□ -0.06
PDLIM1O00151 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
PDLIM1O00151 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PDLIM1O00151 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.69□□□□□ -0.06
PDLIM1O00151 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PDLIM1O00151 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PDLIM1O00151 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
PDLIM1O00151 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC14.68□□□□□ -0.06
PDLIM1O00151 BNIP3P1-202ENST00000550043 1585 ntBASIC14.68□□□□□ -0.06
PDLIM1O00151 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PDLIM1O00151 MANBAL-201ENST00000373605 1915 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
PDLIM1O00151 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PDLIM1O00151 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC14.68□□□□□ -0.06
PDLIM1O00151 AC005562.1-201ENST00000583030 3219 ntBASIC14.68□□□□□ -0.06
PDLIM1O00151 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PDLIM1O00151 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC14.68□□□□□ -0.06
PDLIM1O00151 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC14.68□□□□□ -0.06
PDLIM1O00151 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC14.68□□□□□ -0.06
PDLIM1O00151 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PDLIM1O00151 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC14.68□□□□□ -0.06
PDLIM1O00151 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
PDLIM1O00151 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PDLIM1O00151 ZBTB45P2-201ENST00000452245 1531 ntBASIC14.68□□□□□ -0.06
PDLIM1O00151 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PDLIM1O00151 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
PDLIM1O00151 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC14.68□□□□□ -0.06
PDLIM1O00151 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
PDLIM1O00151 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PDLIM1O00151 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC14.68□□□□□ -0.06
PDLIM1O00151 ACE3P-201ENST00000423435 1973 ntBASIC14.68□□□□□ -0.06
PDLIM1O00151 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
PDLIM1O00151 CD82-202ENST00000342935 967 ntTSL 5 BASIC14.68□□□□□ -0.06
PDLIM1O00151 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PDLIM1O00151 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC14.68□□□□□ -0.06
PDLIM1O00151 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PDLIM1O00151 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC14.68□□□□□ -0.06
PDLIM1O00151 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC14.68□□□□□ -0.06
PDLIM1O00151 AP006288.1-201ENST00000446065 395 ntBASIC14.68□□□□□ -0.06
PDLIM1O00151 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC14.68□□□□□ -0.06
PDLIM1O00151 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC14.68□□□□□ -0.06
PDLIM1O00151 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC14.68□□□□□ -0.06
PDLIM1O00151 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC14.68□□□□□ -0.06
PDLIM1O00151 QPRT-203ENST00000562473 579 ntTSL 3 BASIC14.68□□□□□ -0.06
PDLIM1O00151 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC14.68□□□□□ -0.06
PDLIM1O00151 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC14.68□□□□□ -0.06
PDLIM1O00151 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PDLIM1O00151 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC14.68□□□□□ -0.06
PDLIM1O00151 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
PDLIM1O00151 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PDLIM1O00151 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PDLIM1O00151 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
PDLIM1O00151 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC14.68□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms