Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
PCDHGA1Q9Y5H4 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.17
PCDHGA1Q9Y5H4 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.16
PCDHGA1Q9Y5H4 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC22.33■■□□□ 1.16
PCDHGA1Q9Y5H4 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC22.32■■□□□ 1.16
PCDHGA1Q9Y5H4 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC22.32■■□□□ 1.16
PCDHGA1Q9Y5H4 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
PCDHGA1Q9Y5H4 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC22.32■■□□□ 1.16
PCDHGA1Q9Y5H4 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC22.31■■□□□ 1.16
PCDHGA1Q9Y5H4 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
PCDHGA1Q9Y5H4 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PCDHGA1Q9Y5H4 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC22.31■■□□□ 1.16
PCDHGA1Q9Y5H4 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
PCDHGA1Q9Y5H4 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
PCDHGA1Q9Y5H4 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
PCDHGA1Q9Y5H4 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
PCDHGA1Q9Y5H4 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PCDHGA1Q9Y5H4 AL162430.1-201ENST00000480705 870 ntBASIC22.31■■□□□ 1.16
PCDHGA1Q9Y5H4 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
PCDHGA1Q9Y5H4 AC011298.3-201ENST00000615796 283 ntBASIC22.31■■□□□ 1.16
PCDHGA1Q9Y5H4 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
PCDHGA1Q9Y5H4 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
PCDHGA1Q9Y5H4 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
PCDHGA1Q9Y5H4 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
PCDHGA1Q9Y5H4 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
PCDHGA1Q9Y5H4 REST-206ENST00000612429 1376 ntTSL 5 BASIC22.3■■□□□ 1.16
PCDHGA1Q9Y5H4 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
PCDHGA1Q9Y5H4 REST-207ENST00000616975 1370 ntTSL 5 BASIC22.3■■□□□ 1.16
PCDHGA1Q9Y5H4 SERBP1P1-201ENST00000396021 1160 ntBASIC22.3■■□□□ 1.16
PCDHGA1Q9Y5H4 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
PCDHGA1Q9Y5H4 AC087623.3-201ENST00000607047 1098 ntBASIC22.3■■□□□ 1.16
PCDHGA1Q9Y5H4 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC22.3■■□□□ 1.16
PCDHGA1Q9Y5H4 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC22.29■■□□□ 1.16
PCDHGA1Q9Y5H4 MAG-206ENST00000597035 542 ntTSL 4 BASIC22.29■■□□□ 1.16
PCDHGA1Q9Y5H4 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC22.29■■□□□ 1.16
PCDHGA1Q9Y5H4 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
PCDHGA1Q9Y5H4 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PCDHGA1Q9Y5H4 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
PCDHGA1Q9Y5H4 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
PCDHGA1Q9Y5H4 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PCDHGA1Q9Y5H4 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
PCDHGA1Q9Y5H4 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC22.27■■□□□ 1.16
PCDHGA1Q9Y5H4 IRS3P-201ENST00000223076 1006 ntBASIC22.27■■□□□ 1.16
PCDHGA1Q9Y5H4 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PCDHGA1Q9Y5H4 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
PCDHGA1Q9Y5H4 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PCDHGA1Q9Y5H4 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
PCDHGA1Q9Y5H4 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
PCDHGA1Q9Y5H4 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC22.26■■□□□ 1.15
PCDHGA1Q9Y5H4 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC22.26■■□□□ 1.15
PCDHGA1Q9Y5H4 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC22.26■■□□□ 1.15
PCDHGA1Q9Y5H4 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC22.26■■□□□ 1.15
PCDHGA1Q9Y5H4 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC22.26■■□□□ 1.15
PCDHGA1Q9Y5H4 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
PCDHGA1Q9Y5H4 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
PCDHGA1Q9Y5H4 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PCDHGA1Q9Y5H4 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PCDHGA1Q9Y5H4 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
PCDHGA1Q9Y5H4 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PCDHGA1Q9Y5H4 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PCDHGA1Q9Y5H4 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
PCDHGA1Q9Y5H4 PTCHD3P2-201ENST00000424937 1205 ntBASIC22.25■■□□□ 1.15
PCDHGA1Q9Y5H4 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
PCDHGA1Q9Y5H4 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
PCDHGA1Q9Y5H4 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PCDHGA1Q9Y5H4 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PCDHGA1Q9Y5H4 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
PCDHGA1Q9Y5H4 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PCDHGA1Q9Y5H4 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC22.25■■□□□ 1.15
PCDHGA1Q9Y5H4 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PCDHGA1Q9Y5H4 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PCDHGA1Q9Y5H4 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PCDHGA1Q9Y5H4 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC22.24■■□□□ 1.15
PCDHGA1Q9Y5H4 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC22.24■■□□□ 1.15
PCDHGA1Q9Y5H4 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC22.24■■□□□ 1.15
PCDHGA1Q9Y5H4 AC099791.2-201ENST00000605725 427 ntBASIC22.24■■□□□ 1.15
PCDHGA1Q9Y5H4 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
PCDHGA1Q9Y5H4 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
PCDHGA1Q9Y5H4 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PCDHGA1Q9Y5H4 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC22.24■■□□□ 1.15
PCDHGA1Q9Y5H4 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC22.23■■□□□ 1.15
PCDHGA1Q9Y5H4 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PCDHGA1Q9Y5H4 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC22.23■■□□□ 1.15
PCDHGA1Q9Y5H4 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC22.23■■□□□ 1.15
PCDHGA1Q9Y5H4 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHGA1Q9Y5H4 AC096887.2-201ENST00000623443 1957 ntBASIC22.22■■□□□ 1.15
PCDHGA1Q9Y5H4 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHGA1Q9Y5H4 STK32C-205ENST00000456004 607 ntTSL 2 BASIC22.22■■□□□ 1.15
PCDHGA1Q9Y5H4 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC22.22■■□□□ 1.15
PCDHGA1Q9Y5H4 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
PCDHGA1Q9Y5H4 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHGA1Q9Y5H4 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PCDHGA1Q9Y5H4 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
PCDHGA1Q9Y5H4 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PCDHGA1Q9Y5H4 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
PCDHGA1Q9Y5H4 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PCDHGA1Q9Y5H4 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
PCDHGA1Q9Y5H4 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
PCDHGA1Q9Y5H4 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC22.21■■□□□ 1.15
PCDHGA1Q9Y5H4 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms