Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
ABCA3Q99758 AC136469.2-201ENST00000623944 1028 ntBASIC31.4■■■□□ 2.62
ABCA3Q99758 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
ABCA3Q99758 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
ABCA3Q99758 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC31.39■■■□□ 2.62
ABCA3Q99758 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC31.39■■■□□ 2.62
ABCA3Q99758 ST7-202ENST00000323984 2142 ntTSL 5 BASIC31.39■■■□□ 2.62
ABCA3Q99758 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC31.39■■■□□ 2.62
ABCA3Q99758 ST7-207ENST00000393449 2127 ntTSL 5 BASIC31.39■■■□□ 2.62
ABCA3Q99758 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
ABCA3Q99758 ST7-205ENST00000393446 2114 ntTSL 5 BASIC31.38■■■□□ 2.61
ABCA3Q99758 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC31.38■■■□□ 2.61
ABCA3Q99758 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC31.38■■■□□ 2.61
ABCA3Q99758 AC092171.4-201ENST00000609130 632 ntBASIC31.38■■■□□ 2.61
ABCA3Q99758 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
ABCA3Q99758 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
ABCA3Q99758 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
ABCA3Q99758 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
ABCA3Q99758 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC31.37■■■□□ 2.61
ABCA3Q99758 C17orf82-201ENST00000623772 1530 ntBASIC31.37■■■□□ 2.61
ABCA3Q99758 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
ABCA3Q99758 SHF-208ENST00000560734 1731 ntTSL 3 BASIC31.36■■■□□ 2.61
ABCA3Q99758 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC31.36■■■□□ 2.61
ABCA3Q99758 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
ABCA3Q99758 SNX3-202ENST00000349379 890 ntTSL 2 BASIC31.36■■■□□ 2.61
ABCA3Q99758 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC31.36■■■□□ 2.61
ABCA3Q99758 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC31.36■■■□□ 2.61
ABCA3Q99758 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC31.36■■■□□ 2.61
ABCA3Q99758 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC31.36■■■□□ 2.61
ABCA3Q99758 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC31.36■■■□□ 2.61
ABCA3Q99758 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
ABCA3Q99758 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC31.35■■■□□ 2.61
ABCA3Q99758 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
ABCA3Q99758 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
ABCA3Q99758 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
ABCA3Q99758 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC31.35■■■□□ 2.61
ABCA3Q99758 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
ABCA3Q99758 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC31.35■■■□□ 2.61
ABCA3Q99758 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
ABCA3Q99758 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
ABCA3Q99758 AC006455.2-201ENST00000429931 906 ntBASIC31.35■■■□□ 2.61
ABCA3Q99758 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
ABCA3Q99758 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC31.34■■■□□ 2.61
ABCA3Q99758 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC31.34■■■□□ 2.61
ABCA3Q99758 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC31.34■■■□□ 2.61
ABCA3Q99758 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
ABCA3Q99758 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
ABCA3Q99758 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC31.33■■■□□ 2.61
ABCA3Q99758 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC31.33■■■□□ 2.61
ABCA3Q99758 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC31.33■■■□□ 2.61
ABCA3Q99758 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC31.33■■■□□ 2.61
ABCA3Q99758 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC31.33■■■□□ 2.61
ABCA3Q99758 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC31.33■■■□□ 2.61
ABCA3Q99758 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC31.33■■■□□ 2.61
ABCA3Q99758 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
ABCA3Q99758 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
ABCA3Q99758 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC31.33■■■□□ 2.61
ABCA3Q99758 DENND3-207ENST00000518347 850 ntTSL 2 BASIC31.32■■■□□ 2.61
ABCA3Q99758 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC31.32■■■□□ 2.61
ABCA3Q99758 DUX4L2-201ENST00000561772 1275 ntBASIC31.32■■■□□ 2.61
ABCA3Q99758 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC31.32■■■□□ 2.61
ABCA3Q99758 DUX4L6-201ENST00000626483 1275 ntBASIC31.32■■■□□ 2.61
ABCA3Q99758 DUX4L1-201ENST00000627662 1275 ntBASIC31.32■■■□□ 2.61
ABCA3Q99758 DUX4L8-201ENST00000629013 1275 ntBASIC31.32■■■□□ 2.61
ABCA3Q99758 DUX4L3-201ENST00000630187 1275 ntBASIC31.32■■■□□ 2.61
ABCA3Q99758 DUX4L7-201ENST00000630678 1275 ntBASIC31.32■■■□□ 2.61
ABCA3Q99758 DUX4L5-201ENST00000630834 1275 ntBASIC31.32■■■□□ 2.61
ABCA3Q99758 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
ABCA3Q99758 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC31.32■■■□□ 2.6
ABCA3Q99758 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC31.32■■■□□ 2.6
ABCA3Q99758 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
ABCA3Q99758 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC31.31■■■□□ 2.6
ABCA3Q99758 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
ABCA3Q99758 AC027612.3-201ENST00000413684 1047 ntBASIC31.3■■■□□ 2.6
ABCA3Q99758 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC31.3■■■□□ 2.6
ABCA3Q99758 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC31.3■■■□□ 2.6
ABCA3Q99758 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC31.3■■■□□ 2.6
ABCA3Q99758 AC139426.1-201ENST00000568218 2529 ntBASIC31.3■■■□□ 2.6
ABCA3Q99758 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC31.3■■■□□ 2.6
ABCA3Q99758 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC31.3■■■□□ 2.6
ABCA3Q99758 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC31.29■■■□□ 2.6
ABCA3Q99758 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC31.29■■■□□ 2.6
ABCA3Q99758 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
ABCA3Q99758 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
ABCA3Q99758 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC31.29■■■□□ 2.6
ABCA3Q99758 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
ABCA3Q99758 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
ABCA3Q99758 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
ABCA3Q99758 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
ABCA3Q99758 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC31.28■■■□□ 2.6
ABCA3Q99758 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC31.28■■■□□ 2.6
ABCA3Q99758 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC31.27■■■□□ 2.6
ABCA3Q99758 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
ABCA3Q99758 AK1-201ENST00000223836 736 ntTSL 3 BASIC31.27■■■□□ 2.6
ABCA3Q99758 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC31.27■■■□□ 2.6
ABCA3Q99758 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC31.27■■■□□ 2.6
ABCA3Q99758 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
ABCA3Q99758 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
ABCA3Q99758 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC31.27■■■□□ 2.6
ABCA3Q99758 AC097639.1-201ENST00000565519 1891 ntBASIC31.27■■■□□ 2.6
Retrieved 100 of 98,524 protein–RNA pairs in 9 ms