Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SOX9P48436 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC23.74■■□□□ 1.39
SOX9P48436 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC23.74■■□□□ 1.39
SOX9P48436 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SOX9P48436 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SOX9P48436 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SOX9P48436 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SOX9P48436 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
SOX9P48436 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC23.73■■□□□ 1.39
SOX9P48436 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
SOX9P48436 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC23.72■■□□□ 1.39
SOX9P48436 AC105265.2-201ENST00000467189 838 ntBASIC23.72■■□□□ 1.39
SOX9P48436 AF213884.3-201ENST00000563833 479 ntBASIC23.72■■□□□ 1.39
SOX9P48436 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
SOX9P48436 GRAMD4P4-201ENST00000613563 1115 ntBASIC23.72■■□□□ 1.39
SOX9P48436 AC005703.6-201ENST00000623265 1329 ntBASIC23.72■■□□□ 1.39
SOX9P48436 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
SOX9P48436 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
SOX9P48436 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
SOX9P48436 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC23.71■■□□□ 1.39
SOX9P48436 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SOX9P48436 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
SOX9P48436 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
SOX9P48436 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SOX9P48436 AL136967.2-201ENST00000623968 743 ntBASIC23.7■■□□□ 1.38
SOX9P48436 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SOX9P48436 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SOX9P48436 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC23.69■■□□□ 1.38
SOX9P48436 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC23.69■■□□□ 1.38
SOX9P48436 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SOX9P48436 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SOX9P48436 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SOX9P48436 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
SOX9P48436 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SOX9P48436 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
SOX9P48436 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC23.68■■□□□ 1.38
SOX9P48436 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC23.68■■□□□ 1.38
SOX9P48436 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
SOX9P48436 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC23.68■■□□□ 1.38
SOX9P48436 STOX2-205ENST00000513034 807 ntTSL 3 BASIC23.68■■□□□ 1.38
SOX9P48436 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
SOX9P48436 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC23.67■■□□□ 1.38
SOX9P48436 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SOX9P48436 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
SOX9P48436 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SOX9P48436 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC23.67■■□□□ 1.38
SOX9P48436 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SOX9P48436 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC23.67■■□□□ 1.38
SOX9P48436 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC23.67■■□□□ 1.38
SOX9P48436 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC23.67■■□□□ 1.38
SOX9P48436 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC23.67■■□□□ 1.38
SOX9P48436 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SOX9P48436 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
SOX9P48436 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
SOX9P48436 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
SOX9P48436 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC23.67■■□□□ 1.38
SOX9P48436 AP001330.3-201ENST00000520123 633 ntBASIC23.66■■□□□ 1.38
SOX9P48436 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SOX9P48436 AC092803.2-201ENST00000564287 1899 ntBASIC23.66■■□□□ 1.38
SOX9P48436 REST-206ENST00000612429 1376 ntTSL 5 BASIC23.65■■□□□ 1.38
SOX9P48436 REST-207ENST00000616975 1370 ntTSL 5 BASIC23.65■■□□□ 1.38
SOX9P48436 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC23.65■■□□□ 1.38
SOX9P48436 AC131274.2-201ENST00000580697 1507 ntBASIC23.65■■□□□ 1.38
SOX9P48436 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
SOX9P48436 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC23.65■■□□□ 1.38
SOX9P48436 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SOX9P48436 MIR939-201ENST00000401314 82 ntBASIC23.65■■□□□ 1.38
SOX9P48436 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC23.65■■□□□ 1.38
SOX9P48436 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC23.65■■□□□ 1.38
SOX9P48436 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
SOX9P48436 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC23.64■■□□□ 1.38
SOX9P48436 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
SOX9P48436 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
SOX9P48436 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC23.64■■□□□ 1.38
SOX9P48436 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC23.64■■□□□ 1.38
SOX9P48436 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
SOX9P48436 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
SOX9P48436 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
SOX9P48436 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
SOX9P48436 SYT6-210ENST00000641643 1587 ntBASIC23.64■■□□□ 1.37
SOX9P48436 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
SOX9P48436 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
SOX9P48436 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.37
SOX9P48436 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC23.63■■□□□ 1.37
SOX9P48436 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
SOX9P48436 MIR4767-201ENST00000582827 78 ntBASIC23.63■■□□□ 1.37
SOX9P48436 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
SOX9P48436 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
SOX9P48436 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC23.63■■□□□ 1.37
SOX9P48436 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC23.62■■□□□ 1.37
SOX9P48436 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC23.62■■□□□ 1.37
SOX9P48436 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
SOX9P48436 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
SOX9P48436 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC23.62■■□□□ 1.37
SOX9P48436 DUX4L19-201ENST00000557448 1267 ntBASIC23.62■■□□□ 1.37
SOX9P48436 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
SOX9P48436 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC23.61■■□□□ 1.37
SOX9P48436 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC23.61■■□□□ 1.37
SOX9P48436 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC23.61■■□□□ 1.37
SOX9P48436 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC23.61■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 9.4 ms