Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC21.25■□□□□ 0.99
CPSF4LA6NMK7 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CPSF4LA6NMK7 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CPSF4LA6NMK7 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CPSF4LA6NMK7 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CPSF4LA6NMK7 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CPSF4LA6NMK7 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC21.24■□□□□ 0.99
CPSF4LA6NMK7 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CPSF4LA6NMK7 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CPSF4LA6NMK7 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CPSF4LA6NMK7 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC21.24■□□□□ 0.99
CPSF4LA6NMK7 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CPSF4LA6NMK7 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC21.23■□□□□ 0.99
CPSF4LA6NMK7 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CPSF4LA6NMK7 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CPSF4LA6NMK7 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CPSF4LA6NMK7 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC21.23■□□□□ 0.99
CPSF4LA6NMK7 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
CPSF4LA6NMK7 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC21.23■□□□□ 0.99
CPSF4LA6NMK7 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CPSF4LA6NMK7 AC090877.2-201ENST00000558441 1738 ntBASIC21.23■□□□□ 0.99
CPSF4LA6NMK7 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
CPSF4LA6NMK7 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
CPSF4LA6NMK7 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CPSF4LA6NMK7 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC21.22■□□□□ 0.99
CPSF4LA6NMK7 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CPSF4LA6NMK7 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
CPSF4LA6NMK7 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CPSF4LA6NMK7 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CPSF4LA6NMK7 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
CPSF4LA6NMK7 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
CPSF4LA6NMK7 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CPSF4LA6NMK7 AL592295.1-201ENST00000400984 884 ntBASIC21.21■□□□□ 0.99
CPSF4LA6NMK7 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CPSF4LA6NMK7 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC21.21■□□□□ 0.99
CPSF4LA6NMK7 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
CPSF4LA6NMK7 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CPSF4LA6NMK7 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CPSF4LA6NMK7 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CPSF4LA6NMK7 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
CPSF4LA6NMK7 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CPSF4LA6NMK7 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.99
CPSF4LA6NMK7 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.2■□□□□ 0.99
CPSF4LA6NMK7 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CPSF4LA6NMK7 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC21.2■□□□□ 0.98
CPSF4LA6NMK7 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC21.2■□□□□ 0.98
CPSF4LA6NMK7 AC129492.7-201ENST00000622992 756 ntBASIC21.2■□□□□ 0.98
CPSF4LA6NMK7 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.2■□□□□ 0.98
CPSF4LA6NMK7 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC21.2■□□□□ 0.98
CPSF4LA6NMK7 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
CPSF4LA6NMK7 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
CPSF4LA6NMK7 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
CPSF4LA6NMK7 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CPSF4LA6NMK7 AC133561.1-201ENST00000568600 2415 ntBASIC21.19■□□□□ 0.98
CPSF4LA6NMK7 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
CPSF4LA6NMK7 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.19■□□□□ 0.98
CPSF4LA6NMK7 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CPSF4LA6NMK7 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC21.19■□□□□ 0.98
CPSF4LA6NMK7 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC21.19■□□□□ 0.98
CPSF4LA6NMK7 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.19■□□□□ 0.98
CPSF4LA6NMK7 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CPSF4LA6NMK7 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CPSF4LA6NMK7 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CPSF4LA6NMK7 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CPSF4LA6NMK7 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21.18■□□□□ 0.98
CPSF4LA6NMK7 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CPSF4LA6NMK7 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CPSF4LA6NMK7 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CPSF4LA6NMK7 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CPSF4LA6NMK7 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CPSF4LA6NMK7 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC21.18■□□□□ 0.98
CPSF4LA6NMK7 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.18■□□□□ 0.98
CPSF4LA6NMK7 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.18■□□□□ 0.98
CPSF4LA6NMK7 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
CPSF4LA6NMK7 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC21.18■□□□□ 0.98
CPSF4LA6NMK7 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
CPSF4LA6NMK7 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CPSF4LA6NMK7 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
CPSF4LA6NMK7 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CPSF4LA6NMK7 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
CPSF4LA6NMK7 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
CPSF4LA6NMK7 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
CPSF4LA6NMK7 KRT18P60-201ENST00000312876 1297 ntBASIC21.17■□□□□ 0.98
CPSF4LA6NMK7 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC21.17■□□□□ 0.98
CPSF4LA6NMK7 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CPSF4LA6NMK7 DUSP8P5-201ENST00000422884 1815 ntBASIC21.17■□□□□ 0.98
CPSF4LA6NMK7 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CPSF4LA6NMK7 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CPSF4LA6NMK7 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CPSF4LA6NMK7 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.16■□□□□ 0.98
CPSF4LA6NMK7 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
CPSF4LA6NMK7 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CPSF4LA6NMK7 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CPSF4LA6NMK7 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC21.16■□□□□ 0.98
CPSF4LA6NMK7 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CPSF4LA6NMK7 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21.16■□□□□ 0.98
CPSF4LA6NMK7 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CPSF4LA6NMK7 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CPSF4LA6NMK7 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CPSF4LA6NMK7 SSSCA1-AS1-201ENST00000567594 614 ntBASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms