Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 AL807761.2-201ENST00000422849 729 ntBASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 ST13P19-201ENST00000442505 1124 ntBASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 C18orf15-201ENST00000623680 2534 ntBASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 AC026320.2-201ENST00000434379 478 ntBASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 AL022344.2-201ENST00000568976 968 ntBASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 MIR5196-201ENST00000578146 115 ntBASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 AL161773.1-201ENST00000624845 863 ntBASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SHANK3Q9BYB0 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHANK3Q9BYB0 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHANK3Q9BYB0 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHANK3Q9BYB0 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHANK3Q9BYB0 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHANK3Q9BYB0 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC19.21■□□□□ 0.67
SHANK3Q9BYB0 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SHANK3Q9BYB0 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SHANK3Q9BYB0 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC19.21■□□□□ 0.67
SHANK3Q9BYB0 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHANK3Q9BYB0 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHANK3Q9BYB0 AC026691.1-201ENST00000602502 2017 ntBASIC19.21■□□□□ 0.67
SHANK3Q9BYB0 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SHANK3Q9BYB0 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SHANK3Q9BYB0 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SHANK3Q9BYB0 AC012362.1-201ENST00000434906 739 ntBASIC19.21■□□□□ 0.67
SHANK3Q9BYB0 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHANK3Q9BYB0 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SHANK3Q9BYB0 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC19.21■□□□□ 0.67
SHANK3Q9BYB0 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SHANK3Q9BYB0 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHANK3Q9BYB0 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHANK3Q9BYB0 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHANK3Q9BYB0 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC19.21■□□□□ 0.67
SHANK3Q9BYB0 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHANK3Q9BYB0 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHANK3Q9BYB0 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SHANK3Q9BYB0 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SHANK3Q9BYB0 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC19.21■□□□□ 0.67
SHANK3Q9BYB0 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC19.21■□□□□ 0.66
SHANK3Q9BYB0 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 KHSRPP1-201ENST00000427983 1768 ntBASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 AC126365.1-201ENST00000578585 1514 ntBASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 AC020658.6-201ENST00000623564 1870 ntBASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 AHCYP4-201ENST00000419201 1315 ntBASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 AL512306.1-201ENST00000432698 848 ntBASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SHANK3Q9BYB0 CD164-210ENST00000512821 964 ntTSL 2 BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms