Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SKA3Q8IX90 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
SKA3Q8IX90 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SKA3Q8IX90 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC13.64□□□□□ -0.23
SKA3Q8IX90 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SKA3Q8IX90 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
SKA3Q8IX90 RHOA-206ENST00000454011 889 ntTSL 2 BASIC13.64□□□□□ -0.23
SKA3Q8IX90 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
SKA3Q8IX90 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC13.64□□□□□ -0.23
SKA3Q8IX90 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC13.64□□□□□ -0.23
SKA3Q8IX90 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC13.64□□□□□ -0.23
SKA3Q8IX90 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC13.64□□□□□ -0.23
SKA3Q8IX90 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
SKA3Q8IX90 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC13.64□□□□□ -0.23
SKA3Q8IX90 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SKA3Q8IX90 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC13.64□□□□□ -0.23
SKA3Q8IX90 AC000095.1-201ENST00000603208 874 ntBASIC13.64□□□□□ -0.23
SKA3Q8IX90 AC004233.3-201ENST00000607794 1269 ntBASIC13.64□□□□□ -0.23
SKA3Q8IX90 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SKA3Q8IX90 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SKA3Q8IX90 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
SKA3Q8IX90 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC13.64□□□□□ -0.23
SKA3Q8IX90 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SKA3Q8IX90 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC13.64□□□□□ -0.23
SKA3Q8IX90 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
SKA3Q8IX90 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC13.64□□□□□ -0.23
SKA3Q8IX90 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC13.64□□□□□ -0.23
SKA3Q8IX90 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SKA3Q8IX90 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
SKA3Q8IX90 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
SKA3Q8IX90 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
SKA3Q8IX90 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
SKA3Q8IX90 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SKA3Q8IX90 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SKA3Q8IX90 POLL-217ENST00000628479 1953 ntTSL 5 BASIC13.63□□□□□ -0.23
SKA3Q8IX90 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SKA3Q8IX90 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
SKA3Q8IX90 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC13.63□□□□□ -0.23
SKA3Q8IX90 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SKA3Q8IX90 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SKA3Q8IX90 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
SKA3Q8IX90 AC007541.1-201ENST00000570282 1469 ntBASIC13.63□□□□□ -0.23
SKA3Q8IX90 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC13.63□□□□□ -0.23
SKA3Q8IX90 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SKA3Q8IX90 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SKA3Q8IX90 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SKA3Q8IX90 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SKA3Q8IX90 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
SKA3Q8IX90 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SKA3Q8IX90 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
SKA3Q8IX90 MEP1AP4-201ENST00000423244 1087 ntBASIC13.63□□□□□ -0.23
SKA3Q8IX90 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC13.63□□□□□ -0.23
SKA3Q8IX90 OARD1-208ENST00000469104 704 ntTSL 2 BASIC13.63□□□□□ -0.23
SKA3Q8IX90 RN7SL399P-201ENST00000471648 279 ntBASIC13.63□□□□□ -0.23
SKA3Q8IX90 AC093004.1-201ENST00000508850 424 ntBASIC13.63□□□□□ -0.23
SKA3Q8IX90 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC13.63□□□□□ -0.23
SKA3Q8IX90 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC13.63□□□□□ -0.23
SKA3Q8IX90 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC13.63□□□□□ -0.23
SKA3Q8IX90 GPX4-206ENST00000588919 803 ntTSL 2 BASIC13.63□□□□□ -0.23
SKA3Q8IX90 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC13.63□□□□□ -0.23
SKA3Q8IX90 AC025181.2-201ENST00000606994 802 ntBASIC13.63□□□□□ -0.23
SKA3Q8IX90 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
SKA3Q8IX90 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC13.63□□□□□ -0.23
SKA3Q8IX90 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SKA3Q8IX90 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
SKA3Q8IX90 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC13.63□□□□□ -0.23
SKA3Q8IX90 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SKA3Q8IX90 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
SKA3Q8IX90 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SKA3Q8IX90 AC023157.3-201ENST00000619086 2088 ntBASIC13.63□□□□□ -0.23
SKA3Q8IX90 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SKA3Q8IX90 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SKA3Q8IX90 SBF1P1-201ENST00000444527 5631 ntBASIC13.63□□□□□ -0.23
SKA3Q8IX90 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
SKA3Q8IX90 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SKA3Q8IX90 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC13.63□□□□□ -0.23
SKA3Q8IX90 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SKA3Q8IX90 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC13.63□□□□□ -0.23
SKA3Q8IX90 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SKA3Q8IX90 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
SKA3Q8IX90 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SKA3Q8IX90 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
SKA3Q8IX90 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
SKA3Q8IX90 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC13.63□□□□□ -0.23
SKA3Q8IX90 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SKA3Q8IX90 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
SKA3Q8IX90 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC13.63□□□□□ -0.23
SKA3Q8IX90 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC13.63□□□□□ -0.23
SKA3Q8IX90 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC13.62□□□□□ -0.23
SKA3Q8IX90 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
SKA3Q8IX90 SLC7A15P-201ENST00000424028 1363 ntBASIC13.62□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms