Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SOX3P41225 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SOX3P41225 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SOX3P41225 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
SOX3P41225 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC14.5□□□□□ -0.09
SOX3P41225 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC14.5□□□□□ -0.09
SOX3P41225 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC14.5□□□□□ -0.09
SOX3P41225 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SOX3P41225 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC14.5□□□□□ -0.09
SOX3P41225 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SOX3P41225 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SOX3P41225 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SOX3P41225 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC14.5□□□□□ -0.09
SOX3P41225 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SOX3P41225 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.5□□□□□ -0.09
SOX3P41225 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SOX3P41225 METTL26-204ENST00000397665 558 ntTSL 2 BASIC14.5□□□□□ -0.09
SOX3P41225 AC098850.1-201ENST00000419919 790 ntBASIC14.5□□□□□ -0.09
SOX3P41225 AC005034.1-201ENST00000426657 489 ntBASIC14.5□□□□□ -0.09
SOX3P41225 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC14.5□□□□□ -0.09
SOX3P41225 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC14.5□□□□□ -0.09
SOX3P41225 RRP7BP-205ENST00000566851 833 ntBASIC14.5□□□□□ -0.09
SOX3P41225 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SOX3P41225 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC14.5□□□□□ -0.09
SOX3P41225 AL391069.4-201ENST00000609583 481 ntBASIC14.5□□□□□ -0.09
SOX3P41225 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SOX3P41225 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SOX3P41225 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC14.5□□□□□ -0.09
SOX3P41225 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SOX3P41225 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC14.5□□□□□ -0.09
SOX3P41225 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
SOX3P41225 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SOX3P41225 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC14.5□□□□□ -0.09
SOX3P41225 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SOX3P41225 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
SOX3P41225 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC14.5□□□□□ -0.09
SOX3P41225 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SOX3P41225 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC14.5□□□□□ -0.09
SOX3P41225 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC14.5□□□□□ -0.09
SOX3P41225 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SOX3P41225 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC14.5□□□□□ -0.09
SOX3P41225 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
SOX3P41225 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SOX3P41225 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SOX3P41225 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC14.5□□□□□ -0.09
SOX3P41225 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SOX3P41225 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC14.5□□□□□ -0.09
SOX3P41225 AC104581.4-201ENST00000623126 3052 ntBASIC14.5□□□□□ -0.09
SOX3P41225 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC14.49□□□□□ -0.09
SOX3P41225 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SOX3P41225 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SOX3P41225 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
SOX3P41225 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC14.49□□□□□ -0.09
SOX3P41225 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SOX3P41225 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SOX3P41225 LINC00552-201ENST00000625151 2579 ntBASIC14.49□□□□□ -0.09
SOX3P41225 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC14.49□□□□□ -0.09
SOX3P41225 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SOX3P41225 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
SOX3P41225 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
SOX3P41225 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SOX3P41225 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SOX3P41225 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
SOX3P41225 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SOX3P41225 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SOX3P41225 GRAP-202ENST00000395635 834 ntTSL 2 BASIC14.49□□□□□ -0.09
SOX3P41225 TOMM22P5-201ENST00000416399 439 ntBASIC14.49□□□□□ -0.09
SOX3P41225 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC14.49□□□□□ -0.09
SOX3P41225 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC14.49□□□□□ -0.09
SOX3P41225 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC14.49□□□□□ -0.09
SOX3P41225 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC14.49□□□□□ -0.09
SOX3P41225 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC14.49□□□□□ -0.09
SOX3P41225 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC14.49□□□□□ -0.09
SOX3P41225 AC036164.1-201ENST00000570544 333 ntBASIC14.49□□□□□ -0.09
SOX3P41225 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC14.49□□□□□ -0.09
SOX3P41225 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC14.49□□□□□ -0.09
SOX3P41225 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC14.49□□□□□ -0.09
SOX3P41225 SRP9-204ENST00000619790 377 ntTSL 2 BASIC14.49□□□□□ -0.09
SOX3P41225 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
SOX3P41225 AL035252.4-201ENST00000624174 288 ntBASIC14.49□□□□□ -0.09
SOX3P41225 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC14.49□□□□□ -0.09
SOX3P41225 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC14.49□□□□□ -0.09
SOX3P41225 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC14.49□□□□□ -0.09
SOX3P41225 AC105250.1-201ENST00000509378 2057 ntBASIC14.49□□□□□ -0.09
SOX3P41225 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC14.49□□□□□ -0.09
SOX3P41225 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
SOX3P41225 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
SOX3P41225 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
SOX3P41225 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
SOX3P41225 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
SOX3P41225 CLK3P2-201ENST00000427566 1453 ntBASIC14.49□□□□□ -0.09
SOX3P41225 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
SOX3P41225 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SOX3P41225 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC14.49□□□□□ -0.09
SOX3P41225 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC14.49□□□□□ -0.09
SOX3P41225 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SOX3P41225 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SOX3P41225 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.49□□□□□ -0.09
SOX3P41225 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SOX3P41225 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms