Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC14.1□□□□□ -0.15
RFC3P40938 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RFC3P40938 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
RFC3P40938 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
RFC3P40938 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RFC3P40938 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC14.1□□□□□ -0.15
RFC3P40938 AC012441.1-201ENST00000446669 685 ntBASIC14.1□□□□□ -0.15
RFC3P40938 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC14.1□□□□□ -0.15
RFC3P40938 AC007551.1-201ENST00000457394 519 ntBASIC14.1□□□□□ -0.15
RFC3P40938 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC14.1□□□□□ -0.15
RFC3P40938 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC14.1□□□□□ -0.15
RFC3P40938 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC14.1□□□□□ -0.15
RFC3P40938 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC14.1□□□□□ -0.15
RFC3P40938 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RFC3P40938 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RFC3P40938 FES-204ENST00000414248 2327 ntTSL 2 BASIC14.1□□□□□ -0.15
RFC3P40938 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.1□□□□□ -0.15
RFC3P40938 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
RFC3P40938 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC14.1□□□□□ -0.15
RFC3P40938 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC14.1□□□□□ -0.15
RFC3P40938 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC14.1□□□□□ -0.15
RFC3P40938 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
RFC3P40938 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
RFC3P40938 AC009090.5-201ENST00000624886 2285 ntBASIC14.1□□□□□ -0.15
RFC3P40938 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFC3P40938 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFC3P40938 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC14.09□□□□□ -0.15
RFC3P40938 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC14.09□□□□□ -0.15
RFC3P40938 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.09□□□□□ -0.15
RFC3P40938 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC14.09□□□□□ -0.15
RFC3P40938 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFC3P40938 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
RFC3P40938 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
RFC3P40938 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFC3P40938 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
RFC3P40938 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC14.09□□□□□ -0.15
RFC3P40938 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RFC3P40938 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RFC3P40938 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
RFC3P40938 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFC3P40938 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFC3P40938 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RFC3P40938 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC14.09□□□□□ -0.15
RFC3P40938 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFC3P40938 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RFC3P40938 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC14.09□□□□□ -0.15
RFC3P40938 AC092933.1-201ENST00000393644 945 ntBASIC14.09□□□□□ -0.15
RFC3P40938 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC14.09□□□□□ -0.15
RFC3P40938 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RFC3P40938 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC14.09□□□□□ -0.15
RFC3P40938 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC14.09□□□□□ -0.15
RFC3P40938 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC14.09□□□□□ -0.15
RFC3P40938 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC14.09□□□□□ -0.15
RFC3P40938 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC14.09□□□□□ -0.15
RFC3P40938 AC093813.1-201ENST00000605066 256 ntBASIC14.09□□□□□ -0.15
RFC3P40938 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFC3P40938 HADH-212ENST00000638621 741 ntTSL 5 BASIC14.09□□□□□ -0.15
RFC3P40938 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFC3P40938 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFC3P40938 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFC3P40938 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFC3P40938 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFC3P40938 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
RFC3P40938 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFC3P40938 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFC3P40938 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFC3P40938 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
RFC3P40938 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC14.09□□□□□ -0.15
RFC3P40938 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC14.09□□□□□ -0.15
RFC3P40938 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
RFC3P40938 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.09□□□□□ -0.15
RFC3P40938 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RFC3P40938 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
RFC3P40938 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
RFC3P40938 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
RFC3P40938 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.15
RFC3P40938 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
RFC3P40938 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
RFC3P40938 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC14.08□□□□□ -0.16
RFC3P40938 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RFC3P40938 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RFC3P40938 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RFC3P40938 MFF-204ENST00000353339 2186 ntTSL 5 BASIC14.08□□□□□ -0.16
RFC3P40938 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC14.08□□□□□ -0.16
RFC3P40938 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
RFC3P40938 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RFC3P40938 STX1A-203ENST00000395155 783 ntTSL 2 BASIC14.08□□□□□ -0.16
RFC3P40938 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
RFC3P40938 AC099336.1-201ENST00000417053 1171 ntBASIC14.08□□□□□ -0.16
RFC3P40938 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC14.08□□□□□ -0.16
RFC3P40938 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RFC3P40938 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RFC3P40938 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC14.08□□□□□ -0.16
RFC3P40938 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC14.08□□□□□ -0.16
RFC3P40938 AC025181.2-201ENST00000606994 802 ntBASIC14.08□□□□□ -0.16
RFC3P40938 MIR6799-201ENST00000620297 69 ntBASIC14.08□□□□□ -0.16
RFC3P40938 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RFC3P40938 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RFC3P40938 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC14.08□□□□□ -0.16
RFC3P40938 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC14.08□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 89.2 ms