Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC17.47■□□□□ 0.39
SMARCA1P28370 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SMARCA1P28370 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
SMARCA1P28370 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SMARCA1P28370 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SMARCA1P28370 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SMARCA1P28370 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SMARCA1P28370 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SMARCA1P28370 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SMARCA1P28370 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
SMARCA1P28370 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SMARCA1P28370 TLE1P1-201ENST00000422965 589 ntBASIC17.47■□□□□ 0.39
SMARCA1P28370 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC17.47■□□□□ 0.39
SMARCA1P28370 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC17.47■□□□□ 0.39
SMARCA1P28370 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SMARCA1P28370 FTLP10-202ENST00000505798 471 ntBASIC17.47■□□□□ 0.39
SMARCA1P28370 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC17.47■□□□□ 0.39
SMARCA1P28370 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC17.47■□□□□ 0.39
SMARCA1P28370 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC17.47■□□□□ 0.39
SMARCA1P28370 AL359881.2-201ENST00000602973 570 ntBASIC17.47■□□□□ 0.39
SMARCA1P28370 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC17.47■□□□□ 0.39
SMARCA1P28370 AC138466.3-201ENST00000619983 221 ntBASIC17.47■□□□□ 0.39
SMARCA1P28370 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC17.47■□□□□ 0.39
SMARCA1P28370 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SMARCA1P28370 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
SMARCA1P28370 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC17.47■□□□□ 0.39
SMARCA1P28370 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SMARCA1P28370 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC17.47■□□□□ 0.39
SMARCA1P28370 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SMARCA1P28370 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC17.47■□□□□ 0.39
SMARCA1P28370 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
SMARCA1P28370 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SMARCA1P28370 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SMARCA1P28370 AC091951.1-201ENST00000512854 2465 ntBASIC17.47■□□□□ 0.39
SMARCA1P28370 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SMARCA1P28370 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SMARCA1P28370 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
SMARCA1P28370 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
SMARCA1P28370 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
SMARCA1P28370 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SMARCA1P28370 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SMARCA1P28370 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
SMARCA1P28370 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
SMARCA1P28370 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SMARCA1P28370 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
SMARCA1P28370 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.46■□□□□ 0.39
SMARCA1P28370 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC17.46■□□□□ 0.39
SMARCA1P28370 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SMARCA1P28370 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SMARCA1P28370 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
SMARCA1P28370 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SMARCA1P28370 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SMARCA1P28370 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SMARCA1P28370 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC17.46■□□□□ 0.39
SMARCA1P28370 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SMARCA1P28370 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SMARCA1P28370 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SMARCA1P28370 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC17.46■□□□□ 0.39
SMARCA1P28370 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SMARCA1P28370 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SMARCA1P28370 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SMARCA1P28370 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SMARCA1P28370 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC17.46■□□□□ 0.39
SMARCA1P28370 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SMARCA1P28370 STX1A-203ENST00000395155 783 ntTSL 2 BASIC17.46■□□□□ 0.39
SMARCA1P28370 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SMARCA1P28370 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
SMARCA1P28370 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
SMARCA1P28370 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SMARCA1P28370 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC17.46■□□□□ 0.39
SMARCA1P28370 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC17.46■□□□□ 0.39
SMARCA1P28370 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC17.46■□□□□ 0.39
SMARCA1P28370 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SMARCA1P28370 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC17.46■□□□□ 0.39
SMARCA1P28370 AC138951.2-201ENST00000623455 1161 ntBASIC17.46■□□□□ 0.39
SMARCA1P28370 AC023090.2-201ENST00000625182 2110 ntBASIC17.46■□□□□ 0.39
SMARCA1P28370 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SMARCA1P28370 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC17.46■□□□□ 0.39
SMARCA1P28370 MBP-202ENST00000355994 2772 ntTSL 5 BASIC17.46■□□□□ 0.39
SMARCA1P28370 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
SMARCA1P28370 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SMARCA1P28370 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
SMARCA1P28370 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SMARCA1P28370 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.38
SMARCA1P28370 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
SMARCA1P28370 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
SMARCA1P28370 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC17.45■□□□□ 0.38
SMARCA1P28370 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
SMARCA1P28370 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms