Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CHMP2AO43633 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CHMP2AO43633 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHMP2AO43633 AL157414.3-201ENST00000624276 1954 ntBASIC17.24■□□□□ 0.35
CHMP2AO43633 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHMP2AO43633 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CHMP2AO43633 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC17.24■□□□□ 0.35
CHMP2AO43633 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHMP2AO43633 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CHMP2AO43633 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHMP2AO43633 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CHMP2AO43633 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CHMP2AO43633 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CHMP2AO43633 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC17.23■□□□□ 0.35
CHMP2AO43633 KRT8P35-201ENST00000483942 1338 ntBASIC17.23■□□□□ 0.35
CHMP2AO43633 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHMP2AO43633 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CHMP2AO43633 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHMP2AO43633 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC17.23■□□□□ 0.35
CHMP2AO43633 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC17.23■□□□□ 0.35
CHMP2AO43633 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHMP2AO43633 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CHMP2AO43633 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHMP2AO43633 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHMP2AO43633 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.23■□□□□ 0.35
CHMP2AO43633 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CHMP2AO43633 SLC9A7P1-202ENST00000556476 2239 ntBASIC17.23■□□□□ 0.35
CHMP2AO43633 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC17.23■□□□□ 0.35
CHMP2AO43633 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHMP2AO43633 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC17.23■□□□□ 0.35
CHMP2AO43633 FES-204ENST00000414248 2327 ntTSL 2 BASIC17.23■□□□□ 0.35
CHMP2AO43633 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHMP2AO43633 ACKR1-201ENST00000368121 1240 ntBASIC17.23■□□□□ 0.35
CHMP2AO43633 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC17.23■□□□□ 0.35
CHMP2AO43633 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHMP2AO43633 AC005229.1-201ENST00000392885 409 ntBASIC17.23■□□□□ 0.35
CHMP2AO43633 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CHMP2AO43633 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHMP2AO43633 MPV17-208ENST00000405076 603 ntTSL 5 BASIC17.23■□□□□ 0.35
CHMP2AO43633 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHMP2AO43633 ATP5G2P4-201ENST00000442175 420 ntBASIC17.23■□□□□ 0.35
CHMP2AO43633 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC17.23■□□□□ 0.35
CHMP2AO43633 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC17.23■□□□□ 0.35
CHMP2AO43633 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC17.23■□□□□ 0.35
CHMP2AO43633 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC17.23■□□□□ 0.35
CHMP2AO43633 AC106886.1-201ENST00000568660 600 ntBASIC17.23■□□□□ 0.35
CHMP2AO43633 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC17.23■□□□□ 0.35
CHMP2AO43633 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHMP2AO43633 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CHMP2AO43633 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CHMP2AO43633 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
CHMP2AO43633 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CHMP2AO43633 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC17.23■□□□□ 0.35
CHMP2AO43633 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC17.23■□□□□ 0.35
CHMP2AO43633 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
CHMP2AO43633 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CHMP2AO43633 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHMP2AO43633 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHMP2AO43633 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHMP2AO43633 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC17.23■□□□□ 0.35
CHMP2AO43633 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHMP2AO43633 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHMP2AO43633 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHMP2AO43633 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CHMP2AO43633 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CHMP2AO43633 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHMP2AO43633 REXO1L5P-201ENST00000622260 2098 ntBASIC17.22■□□□□ 0.35
CHMP2AO43633 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CHMP2AO43633 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC17.22■□□□□ 0.35
CHMP2AO43633 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHMP2AO43633 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHMP2AO43633 REXO1L4P-201ENST00000605109 1937 ntBASIC17.22■□□□□ 0.35
CHMP2AO43633 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC17.22■□□□□ 0.35
CHMP2AO43633 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC17.22■□□□□ 0.35
CHMP2AO43633 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC17.22■□□□□ 0.35
CHMP2AO43633 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC17.22■□□□□ 0.35
CHMP2AO43633 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHMP2AO43633 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC17.22■□□□□ 0.35
CHMP2AO43633 PGGT1BP2-201ENST00000398621 1028 ntBASIC17.22■□□□□ 0.35
CHMP2AO43633 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC17.22■□□□□ 0.35
CHMP2AO43633 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC17.22■□□□□ 0.35
CHMP2AO43633 FTH1P14-201ENST00000482930 551 ntBASIC17.22■□□□□ 0.35
CHMP2AO43633 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC17.22■□□□□ 0.35
CHMP2AO43633 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC17.22■□□□□ 0.35
CHMP2AO43633 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC17.22■□□□□ 0.35
CHMP2AO43633 NOP2-220ENST00000545915 630 ntTSL 2 BASIC17.22■□□□□ 0.35
CHMP2AO43633 SNX29P1-201ENST00000548357 1007 ntBASIC17.22■□□□□ 0.35
CHMP2AO43633 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC17.22■□□□□ 0.35
CHMP2AO43633 IFT20-216ENST00000588477 774 ntTSL 5 BASIC17.22■□□□□ 0.35
CHMP2AO43633 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHMP2AO43633 WNT11-204ENST00000621122 789 ntTSL 5 BASIC17.22■□□□□ 0.35
CHMP2AO43633 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC17.22■□□□□ 0.35
CHMP2AO43633 AL645728.2-202ENST00000641679 227 ntBASIC17.22■□□□□ 0.35
CHMP2AO43633 KRT8P44-201ENST00000441609 1350 ntBASIC17.22■□□□□ 0.35
CHMP2AO43633 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.22■□□□□ 0.35
CHMP2AO43633 ZBTB45P1-201ENST00000452761 1456 ntBASIC17.22■□□□□ 0.35
CHMP2AO43633 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CHMP2AO43633 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHMP2AO43633 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CHMP2AO43633 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms