Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
TTC28Q96AY4 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
TTC28Q96AY4 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
TTC28Q96AY4 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
TTC28Q96AY4 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
TTC28Q96AY4 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TTC28Q96AY4 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TTC28Q96AY4 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TTC28Q96AY4 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TTC28Q96AY4 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC15.14■□□□□ 0.01
TTC28Q96AY4 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TTC28Q96AY4 IL1F10-201ENST00000341010 1013 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TTC28Q96AY4 GUSBP10-201ENST00000417412 665 ntBASIC15.14■□□□□ 0.01
TTC28Q96AY4 AC104961.1-201ENST00000427605 771 ntBASIC15.14■□□□□ 0.01
TTC28Q96AY4 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
TTC28Q96AY4 LINC01502-203ENST00000447907 880 ntTSL 3 BASIC15.14■□□□□ 0.01
TTC28Q96AY4 CDK4P1-201ENST00000454213 828 ntBASIC15.14■□□□□ 0.01
TTC28Q96AY4 CRYAB-213ENST00000533475 1119 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
TTC28Q96AY4 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC15.14■□□□□ 0.01
TTC28Q96AY4 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC15.14■□□□□ 0.01
TTC28Q96AY4 AL353658.2-201ENST00000629794 519 ntTSL 5 BASIC15.14■□□□□ 0.01
TTC28Q96AY4 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
TTC28Q96AY4 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TTC28Q96AY4 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
TTC28Q96AY4 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC15.14■□□□□ 0.01
TTC28Q96AY4 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TTC28Q96AY4 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
TTC28Q96AY4 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
TTC28Q96AY4 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC15.14■□□□□ 0.01
TTC28Q96AY4 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC15.14■□□□□ 0.01
TTC28Q96AY4 AC026786.1-201ENST00000540096 1374 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
TTC28Q96AY4 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC15.14■□□□□ 0.01
TTC28Q96AY4 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
TTC28Q96AY4 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC15.14■□□□□ 0.01
TTC28Q96AY4 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
TTC28Q96AY4 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TTC28Q96AY4 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TTC28Q96AY4 AC018629.1-201ENST00000623381 1736 ntBASIC15.14■□□□□ 0.01
TTC28Q96AY4 MED15P3-201ENST00000413613 326 ntBASIC15.14■□□□□ 0.01
TTC28Q96AY4 LINC01693-202ENST00000430123 357 ntTSL 3 BASIC15.14■□□□□ 0.01
TTC28Q96AY4 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC15.14■□□□□ 0.01
TTC28Q96AY4 AC008440.1-201ENST00000455835 439 ntTSL 5 BASIC15.14■□□□□ 0.01
TTC28Q96AY4 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC15.14■□□□□ 0.01
TTC28Q96AY4 AF274856.1-202ENST00000509345 871 ntTSL 4 BASIC15.14■□□□□ 0.01
TTC28Q96AY4 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC15.14■□□□□ 0.01
TTC28Q96AY4 AC011489.1-201ENST00000586744 690 ntTSL 3 BASIC15.14■□□□□ 0.01
TTC28Q96AY4 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC15.14■□□□□ 0.01
TTC28Q96AY4 AL357143.1-203ENST00000639750 881 ntBASIC15.14■□□□□ 0.01
TTC28Q96AY4 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC15.14■□□□□ 0.01
TTC28Q96AY4 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
TTC28Q96AY4 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TTC28Q96AY4 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TTC28Q96AY4 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TTC28Q96AY4 AL138725.1-201ENST00000407347 1314 ntBASIC15.13■□□□□ 0.01
TTC28Q96AY4 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TTC28Q96AY4 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC15.13■□□□□ 0.01
TTC28Q96AY4 CYP4F23P-201ENST00000593402 1579 ntBASIC15.13■□□□□ 0.01
TTC28Q96AY4 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC15.13■□□□□ 0.01
TTC28Q96AY4 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TTC28Q96AY4 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.13■□□□□ 0.01
TTC28Q96AY4 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC15.13■□□□□ 0.01
TTC28Q96AY4 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
TTC28Q96AY4 WASH3P-207ENST00000560956 1394 ntBASIC15.13■□□□□ 0.01
TTC28Q96AY4 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC15.13■□□□□ 0.01
TTC28Q96AY4 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
TTC28Q96AY4 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC15.13■□□□□ 0.01
TTC28Q96AY4 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC15.13■□□□□ 0.01
TTC28Q96AY4 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
TTC28Q96AY4 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC15.13■□□□□ 0.01
TTC28Q96AY4 AC006449.5-201ENST00000610658 2098 ntBASIC15.13■□□□□ 0.01
TTC28Q96AY4 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC15.13■□□□□ 0.01
TTC28Q96AY4 GEMIN8P4-201ENST00000380526 729 ntBASIC15.13■□□□□ 0.01
TTC28Q96AY4 PEBP1P3-201ENST00000455475 548 ntBASIC15.13■□□□□ 0.01
TTC28Q96AY4 ALG3P1-201ENST00000508806 1114 ntBASIC15.13■□□□□ 0.01
TTC28Q96AY4 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC15.13■□□□□ 0.01
TTC28Q96AY4 OR5BD1P-201ENST00000532527 817 ntBASIC15.13■□□□□ 0.01
TTC28Q96AY4 AC007728.1-202ENST00000564510 787 ntTSL 3 BASIC15.13■□□□□ 0.01
TTC28Q96AY4 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TTC28Q96AY4 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
TTC28Q96AY4 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TTC28Q96AY4 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC15.13■□□□□ 0.01
TTC28Q96AY4 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC15.13■□□□□ 0.01
TTC28Q96AY4 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TTC28Q96AY4 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
TTC28Q96AY4 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TTC28Q96AY4 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC15.13■□□□□ 0.01
TTC28Q96AY4 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TTC28Q96AY4 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC15.13■□□□□ 0.01
TTC28Q96AY4 AC012313.1-201ENST00000593393 3059 ntBASIC15.13■□□□□ 0.01
TTC28Q96AY4 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TTC28Q96AY4 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TTC28Q96AY4 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TTC28Q96AY4 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TTC28Q96AY4 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
TTC28Q96AY4 SNORA57-201ENST00000383870 149 ntBASIC15.12■□□□□ 0.01
TTC28Q96AY4 AAMDC-207ENST00000527134 693 ntTSL 3 BASIC15.12■□□□□ 0.01
TTC28Q96AY4 HELLS-212ENST00000630929 400 ntTSL 5 BASIC15.12■□□□□ 0.01
TTC28Q96AY4 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TTC28Q96AY4 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC15.12■□□□□ 0.01
TTC28Q96AY4 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms