Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC18.11■□□□□ 0.49
SYNE3Q6ZMZ3 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
SYNE3Q6ZMZ3 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SYNE3Q6ZMZ3 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
SYNE3Q6ZMZ3 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC18.11■□□□□ 0.49
SYNE3Q6ZMZ3 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC18.11■□□□□ 0.49
SYNE3Q6ZMZ3 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
SYNE3Q6ZMZ3 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 AC068418.2-201ENST00000577309 3703 ntBASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 CALY-202ENST00000368555 783 ntTSL 2 BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 INO80C-210ENST00000590757 595 ntTSL 2 BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 OR2I1P-210ENST00000642037 4691 ntBASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 AL365209.1-201ENST00000624418 6473 ntBASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SYNE3Q6ZMZ3 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 METTL26-204ENST00000397665 558 ntTSL 2 BASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 AC134915.1-201ENST00000426461 574 ntBASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 MYCLP2-201ENST00000449268 967 ntBASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 VDAC1P7-201ENST00000462417 847 ntBASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 POLD4-211ENST00000539074 714 ntTSL 3 BASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 MIR8072-201ENST00000614241 80 ntBASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
SYNE3Q6ZMZ3 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
SYNE3Q6ZMZ3 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC18.08■□□□□ 0.49
SYNE3Q6ZMZ3 MST1L-201ENST00000442552 2185 ntBASIC18.08■□□□□ 0.49
SYNE3Q6ZMZ3 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC18.08■□□□□ 0.49
SYNE3Q6ZMZ3 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC18.08■□□□□ 0.49
SYNE3Q6ZMZ3 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SYNE3Q6ZMZ3 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SYNE3Q6ZMZ3 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
SYNE3Q6ZMZ3 DRD5P1-201ENST00000456605 1438 ntBASIC18.08■□□□□ 0.49
SYNE3Q6ZMZ3 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SYNE3Q6ZMZ3 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC18.08■□□□□ 0.49
SYNE3Q6ZMZ3 CELP-203ENST00000624767 2414 ntTSL 5 BASIC18.08■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms