Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN4P29074 COPE-202ENST00000349893 948 ntTSL 2 BASIC15.51■□□□□ 0.07
PTPN4P29074 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN4P29074 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC15.51■□□□□ 0.07
PTPN4P29074 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.51■□□□□ 0.07
PTPN4P29074 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC15.51■□□□□ 0.07
PTPN4P29074 AC004890.2-204ENST00000481968 304 ntBASIC15.51■□□□□ 0.07
PTPN4P29074 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN4P29074 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC15.51■□□□□ 0.07
PTPN4P29074 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC15.51■□□□□ 0.07
PTPN4P29074 AL590560.3-201ENST00000623350 461 ntBASIC15.51■□□□□ 0.07
PTPN4P29074 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN4P29074 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
PTPN4P29074 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN4P29074 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
PTPN4P29074 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN4P29074 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC15.51■□□□□ 0.07
PTPN4P29074 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN4P29074 C8orf49-201ENST00000525043 1968 ntBASIC15.51■□□□□ 0.07
PTPN4P29074 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN4P29074 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN4P29074 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN4P29074 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
PTPN4P29074 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN4P29074 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN4P29074 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN4P29074 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN4P29074 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
PTPN4P29074 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
PTPN4P29074 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC15.5■□□□□ 0.07
PTPN4P29074 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN4P29074 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC15.5■□□□□ 0.07
PTPN4P29074 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN4P29074 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC15.5■□□□□ 0.07
PTPN4P29074 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN4P29074 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN4P29074 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN4P29074 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
PTPN4P29074 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC15.5■□□□□ 0.07
PTPN4P29074 WBP2-203ENST00000433525 928 ntTSL 2 BASIC15.5■□□□□ 0.07
PTPN4P29074 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC15.5■□□□□ 0.07
PTPN4P29074 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC15.5■□□□□ 0.07
PTPN4P29074 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN4P29074 SPTSSB-204ENST00000617024 1292 ntBASIC15.5■□□□□ 0.07
PTPN4P29074 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN4P29074 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN4P29074 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN4P29074 BX640514.1-201ENST00000583223 1918 ntBASIC15.5■□□□□ 0.07
PTPN4P29074 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
PTPN4P29074 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN4P29074 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN4P29074 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN4P29074 STRN-202ENST00000379213 2254 ntTSL 5 BASIC15.5■□□□□ 0.07
PTPN4P29074 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
PTPN4P29074 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC15.5■□□□□ 0.07
PTPN4P29074 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN4P29074 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC15.5■□□□□ 0.07
PTPN4P29074 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN4P29074 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN4P29074 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN4P29074 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.49■□□□□ 0.07
PTPN4P29074 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN4P29074 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC15.49■□□□□ 0.07
PTPN4P29074 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
PTPN4P29074 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN4P29074 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC15.49■□□□□ 0.07
PTPN4P29074 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN4P29074 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN4P29074 FOXO1B-201ENST00000504678 1527 ntBASIC15.49■□□□□ 0.07
PTPN4P29074 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
PTPN4P29074 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC15.49■□□□□ 0.07
PTPN4P29074 HSPA7-201ENST00000445535 1927 ntBASIC15.49■□□□□ 0.07
PTPN4P29074 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
PTPN4P29074 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN4P29074 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN4P29074 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC15.49■□□□□ 0.07
PTPN4P29074 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN4P29074 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN4P29074 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.49■□□□□ 0.07
PTPN4P29074 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC15.49■□□□□ 0.07
PTPN4P29074 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN4P29074 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
PTPN4P29074 AP001282.1-201ENST00000531301 1499 ntBASIC15.49■□□□□ 0.07
PTPN4P29074 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN4P29074 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN4P29074 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
PTPN4P29074 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC15.49■□□□□ 0.07
PTPN4P29074 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC15.49■□□□□ 0.07
PTPN4P29074 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
PTPN4P29074 AL353705.2-201ENST00000428243 662 ntBASIC15.49■□□□□ 0.07
PTPN4P29074 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC15.49■□□□□ 0.07
PTPN4P29074 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC15.49■□□□□ 0.07
PTPN4P29074 LY6E-204ENST00000519546 971 ntTSL 2 BASIC15.49■□□□□ 0.07
PTPN4P29074 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC15.49■□□□□ 0.07
PTPN4P29074 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC15.49■□□□□ 0.07
PTPN4P29074 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC15.49■□□□□ 0.07
PTPN4P29074 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
PTPN4P29074 QPRT-203ENST00000562473 579 ntTSL 3 BASIC15.49■□□□□ 0.07
PTPN4P29074 COX11-202ENST00000571584 1108 ntTSL 2 BASIC15.49■□□□□ 0.07
PTPN4P29074 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms