Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DMBP28068 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 KCP-203ENST00000610776 5108 ntTSL 5 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DMBP28068 UCKL1-AS1-201ENST00000623569 3602 ntBASIC11.78□□□□□ -0.52
HLA-DMBP28068 AC232323.1-201ENST00000540724 2099 ntBASIC11.78□□□□□ -0.52
HLA-DMBP28068 REXO1L5P-201ENST00000622260 2098 ntBASIC11.78□□□□□ -0.52
HLA-DMBP28068 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DMBP28068 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DMBP28068 AC007292.2-201ENST00000593524 1812 ntBASIC11.78□□□□□ -0.52
HLA-DMBP28068 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DMBP28068 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DMBP28068 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DMBP28068 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DMBP28068 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DMBP28068 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DMBP28068 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HLA-DMBP28068 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC11.78□□□□□ -0.52
HLA-DMBP28068 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
HLA-DMBP28068 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HLA-DMBP28068 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.52
HLA-DMBP28068 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HLA-DMBP28068 AL359258.3-201ENST00000622910 2331 ntBASIC11.77□□□□□ -0.52
HLA-DMBP28068 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HLA-DMBP28068 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC11.77□□□□□ -0.52
HLA-DMBP28068 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HLA-DMBP28068 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HLA-DMBP28068 CNTNAP3P2-201ENST00000617175 3861 ntBASIC11.77□□□□□ -0.52
HLA-DMBP28068 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.52
HLA-DMBP28068 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HLA-DMBP28068 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HLA-DMBP28068 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
HLA-DMBP28068 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HLA-DMBP28068 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC11.77□□□□□ -0.52
HLA-DMBP28068 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HLA-DMBP28068 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
HLA-DMBP28068 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC11.77□□□□□ -0.52
HLA-DMBP28068 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DMBP28068 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC11.77□□□□□ -0.53
HLA-DMBP28068 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DMBP28068 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DMBP28068 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DMBP28068 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DMBP28068 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DMBP28068 MROH4P-201ENST00000431302 1578 ntBASIC11.77□□□□□ -0.53
HLA-DMBP28068 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DMBP28068 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DMBP28068 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DMBP28068 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DMBP28068 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DMBP28068 FO393414.2-201ENST00000405153 598 ntBASIC11.77□□□□□ -0.53
HLA-DMBP28068 WDR53-203ENST00000429115 683 ntTSL 2 BASIC11.77□□□□□ -0.53
HLA-DMBP28068 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC11.77□□□□□ -0.53
HLA-DMBP28068 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DMBP28068 AC069262.1-201ENST00000539058 672 ntBASIC11.77□□□□□ -0.53
HLA-DMBP28068 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC11.77□□□□□ -0.53
HLA-DMBP28068 AL512356.2-201ENST00000546955 174 ntBASIC11.77□□□□□ -0.53
HLA-DMBP28068 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC11.77□□□□□ -0.53
HLA-DMBP28068 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC11.77□□□□□ -0.53
HLA-DMBP28068 AC007967.4-201ENST00000614700 386 ntBASIC11.77□□□□□ -0.53
HLA-DMBP28068 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
HLA-DMBP28068 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC11.77□□□□□ -0.53
HLA-DMBP28068 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
HLA-DMBP28068 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DMBP28068 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC11.77□□□□□ -0.53
HLA-DMBP28068 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DMBP28068 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC11.77□□□□□ -0.53
HLA-DMBP28068 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC11.77□□□□□ -0.53
HLA-DMBP28068 TUBB3P1-201ENST00000405796 1332 ntBASIC11.77□□□□□ -0.53
HLA-DMBP28068 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DMBP28068 AL390755.1-201ENST00000623716 2027 ntBASIC11.77□□□□□ -0.53
HLA-DMBP28068 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DMBP28068 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
HLA-DMBP28068 KRT8P12-202ENST00000472924 1397 ntBASIC11.77□□□□□ -0.53
HLA-DMBP28068 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DMBP28068 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DMBP28068 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
HLA-DMBP28068 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DMBP28068 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DMBP28068 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC11.77□□□□□ -0.53
HLA-DMBP28068 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC11.77□□□□□ -0.53
HLA-DMBP28068 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
HLA-DMBP28068 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HLA-DMBP28068 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC11.76□□□□□ -0.53
HLA-DMBP28068 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DMBP28068 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DMBP28068 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HLA-DMBP28068 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC11.76□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms