Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC4P09017 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC4P09017 RPS3-201ENST00000278572 907 ntTSL 3 BASIC14.84□□□□□ -0.03
HOXC4P09017 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC4P09017 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC4P09017 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC4P09017 MIR663B-201ENST00000408361 115 ntBASIC14.84□□□□□ -0.03
HOXC4P09017 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC14.84□□□□□ -0.03
HOXC4P09017 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC14.84□□□□□ -0.03
HOXC4P09017 CDC23-208ENST00000505120 455 ntTSL 3 BASIC14.84□□□□□ -0.03
HOXC4P09017 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC14.84□□□□□ -0.03
HOXC4P09017 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC14.84□□□□□ -0.03
HOXC4P09017 PRKN-211ENST00000615065 261 ntTSL 5 BASIC14.84□□□□□ -0.03
HOXC4P09017 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC14.84□□□□□ -0.03
HOXC4P09017 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.84□□□□□ -0.03
HOXC4P09017 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC4P09017 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC4P09017 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC14.84□□□□□ -0.03
HOXC4P09017 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC4P09017 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC14.84□□□□□ -0.03
HOXC4P09017 AL138725.1-201ENST00000407347 1314 ntBASIC14.84□□□□□ -0.03
HOXC4P09017 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC14.84□□□□□ -0.03
HOXC4P09017 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC4P09017 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC14.84□□□□□ -0.03
HOXC4P09017 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC14.84□□□□□ -0.03
HOXC4P09017 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC4P09017 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
HOXC4P09017 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC14.84□□□□□ -0.03
HOXC4P09017 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXC4P09017 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
HOXC4P09017 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.03
HOXC4P09017 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
HOXC4P09017 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC14.83□□□□□ -0.03
HOXC4P09017 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC14.83□□□□□ -0.03
HOXC4P09017 GSN-206ENST00000394353 2311 ntTSL 2 BASIC14.83□□□□□ -0.03
HOXC4P09017 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
HOXC4P09017 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.03
HOXC4P09017 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXC4P09017 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HOXC4P09017 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXC4P09017 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXC4P09017 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXC4P09017 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
HOXC4P09017 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXC4P09017 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXC4P09017 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXC4P09017 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXC4P09017 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXC4P09017 RN7SKP175-201ENST00000408472 289 ntBASIC14.83□□□□□ -0.04
HOXC4P09017 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
HOXC4P09017 HSPB1P2-201ENST00000448722 546 ntBASIC14.83□□□□□ -0.04
HOXC4P09017 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXC4P09017 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXC4P09017 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC14.83□□□□□ -0.04
HOXC4P09017 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC14.83□□□□□ -0.04
HOXC4P09017 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC14.83□□□□□ -0.04
HOXC4P09017 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC14.83□□□□□ -0.04
HOXC4P09017 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC14.83□□□□□ -0.04
HOXC4P09017 DIO1-215ENST00000610607 796 ntTSL 5 BASIC14.83□□□□□ -0.04
HOXC4P09017 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC14.83□□□□□ -0.04
HOXC4P09017 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC14.83□□□□□ -0.04
HOXC4P09017 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC14.83□□□□□ -0.04
HOXC4P09017 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXC4P09017 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXC4P09017 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC14.83□□□□□ -0.04
HOXC4P09017 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HOXC4P09017 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HOXC4P09017 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC14.83□□□□□ -0.04
HOXC4P09017 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
HOXC4P09017 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC14.83□□□□□ -0.04
HOXC4P09017 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXC4P09017 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
HOXC4P09017 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC14.83□□□□□ -0.04
HOXC4P09017 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC14.83□□□□□ -0.04
HOXC4P09017 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXC4P09017 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HOXC4P09017 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXC4P09017 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC14.82□□□□□ -0.04
HOXC4P09017 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC14.82□□□□□ -0.04
HOXC4P09017 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXC4P09017 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HOXC4P09017 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HOXC4P09017 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXC4P09017 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
HOXC4P09017 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXC4P09017 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXC4P09017 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXC4P09017 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXC4P09017 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXC4P09017 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC14.82□□□□□ -0.04
HOXC4P09017 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HOXC4P09017 LCK-206ENST00000373564 2137 ntTSL 5 BASIC14.82□□□□□ -0.04
HOXC4P09017 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
HOXC4P09017 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC14.82□□□□□ -0.04
HOXC4P09017 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC14.82□□□□□ -0.04
HOXC4P09017 POM121L10P-201ENST00000436994 1285 ntBASIC14.82□□□□□ -0.04
HOXC4P09017 AC006033.1-201ENST00000440505 426 ntBASIC14.82□□□□□ -0.04
HOXC4P09017 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HOXC4P09017 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXC4P09017 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms