Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 AC254562.1-201ENST00000417586 456 ntBASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 DAD1-205ENST00000543337 501 ntTSL 3 BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 AC092865.5-201ENST00000545435 363 ntBASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 AC010336.2-201ENST00000564226 506 ntBASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 COQ4-205ENST00000609948 956 ntTSL 2 BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 AL596442.2-201ENST00000610240 980 ntBASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 AL138828.2-201ENST00000615812 383 ntBASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 SERF2-217ENST00000630046 862 ntTSL 5 BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 AC134684.3-201ENST00000641758 218 ntBASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 AL109936.8-201ENST00000641772 604 ntBASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 SF1-209ENST00000433274 2317 ntTSL 2 BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
ATG4AQ8WYN0 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 C1R-202ENST00000536053 2347 ntTSL 2 BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 FES-203ENST00000394302 2133 ntTSL 5 BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 AC051619.7-201ENST00000568314 623 ntBASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
ATG4AQ8WYN0 AC012508.2-201ENST00000567613 1472 ntBASIC15.96■□□□□ 0.14
ATG4AQ8WYN0 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
ATG4AQ8WYN0 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.14
ATG4AQ8WYN0 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
ATG4AQ8WYN0 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
ATG4AQ8WYN0 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
ATG4AQ8WYN0 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
ATG4AQ8WYN0 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
ATG4AQ8WYN0 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC15.95■□□□□ 0.14
ATG4AQ8WYN0 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
ATG4AQ8WYN0 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
ATG4AQ8WYN0 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
ATG4AQ8WYN0 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
ATG4AQ8WYN0 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
ATG4AQ8WYN0 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
ATG4AQ8WYN0 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
ATG4AQ8WYN0 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms