Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 PTK7-212ENST00000476760 902 ntTSL 2 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 NEU3-203ENST00000529024 581 ntTSL 3 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 ST5-256ENST00000534127 4545 ntAPPRIS P4 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 CYP26B1-205ENST00000546307 4331 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 GATC-203ENST00000551765 4244 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 OSM-203ENST00000403463 464 ntTSL 3 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 LENG8-201ENST00000326764 3991 ntAPPRIS P2 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 SH3BGRL2-201ENST00000369838 4653 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC4.8□□□□□ -1.64
SYNE1Q8NF91 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 C2orf69P2-201ENST00000562032 1123 ntBASIC4.8□□□□□ -1.64
SYNE1Q8NF91 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 DRD5P1-201ENST00000456605 1438 ntBASIC4.8□□□□□ -1.64
SYNE1Q8NF91 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 FZD7-201ENST00000286201 3859 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 DNM3-206ENST00000520906 4454 ntTSL 2 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC4.8□□□□□ -1.64
SYNE1Q8NF91 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 PARP8-218ENST00000513738 596 ntTSL 4 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 NRDC-214ENST00000544028 3819 ntTSL 5 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 BAHD1-203ENST00000561234 4698 ntAPPRIS ALT1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 ABL2-210ENST00000511413 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 AC005622.1-201ENST00000636801 1703 ntBASIC4.79□□□□□ -1.64
SYNE1Q8NF91 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SYNE1Q8NF91 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms